Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24300 and RALBFv3_RS17885 overlap by 4 nucleotides RALBFv3_RS17885 and RALBFv3_RS17890 are separated by 35 nucleotides
RALBFv3_RS24300: RALBFv3_RS24300 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 516,562 to 518,871
_RS24300
RALBFv3_RS17885: RALBFv3_RS17885 - alcohol dehydrogenase, at 518,868 to 520,037
_RS17885
RALBFv3_RS17890: RALBFv3_RS17890 - 4-hydroxy-tetrahydrodipicolinate synthase, at 520,073 to 520,969
_RS17890
Position (kb) 518
519
520
521 Strain fitness (log2 ratio) -1
0
1
2
3 at 518.887 kb on + strand at 518.887 kb on + strand at 518.887 kb on + strand at 518.888 kb on - strand at 518.888 kb on - strand at 518.888 kb on - strand at 519.335 kb on - strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 520.024 kb on + strand at 520.025 kb on - strand at 520.025 kb on - strand at 520.098 kb on + strand at 520.099 kb on - strand at 520.212 kb on + strand, within RALBFv3_RS17890 at 520.561 kb on + strand, within RALBFv3_RS17890 at 520.561 kb on + strand, within RALBFv3_RS17890 at 520.564 kb on - strand, within RALBFv3_RS17890 at 520.564 kb on - strand, within RALBFv3_RS17890 at 520.605 kb on + strand, within RALBFv3_RS17890 at 520.605 kb on + strand, within RALBFv3_RS17890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 518,887 + +0.5 518,887 + -1.1 518,887 + +1.7 518,888 - +1.1 518,888 - +2.3 518,888 - -1.3 519,335 - RALBFv3_RS17885 0.40 +0.9 519,418 + RALBFv3_RS17885 0.47 -0.9 519,418 + RALBFv3_RS17885 0.47 +1.3 519,418 + RALBFv3_RS17885 0.47 -0.5 519,418 + RALBFv3_RS17885 0.47 -1.4 519,418 + RALBFv3_RS17885 0.47 +3.0 519,418 + RALBFv3_RS17885 0.47 -0.1 519,419 - RALBFv3_RS17885 0.47 -0.3 519,419 - RALBFv3_RS17885 0.47 -0.6 519,419 - RALBFv3_RS17885 0.47 -0.8 520,024 + -0.3 520,025 - +1.3 520,025 - -0.3 520,098 + +0.6 520,099 - -0.1 520,212 + RALBFv3_RS17890 0.15 -0.8 520,561 + RALBFv3_RS17890 0.54 +1.1 520,561 + RALBFv3_RS17890 0.54 -0.8 520,564 - RALBFv3_RS17890 0.55 +1.5 520,564 - RALBFv3_RS17890 0.55 -1.1 520,605 + RALBFv3_RS17890 0.59 -0.5 520,605 + RALBFv3_RS17890 0.59 -0.4
Or see this region's nucleotide sequence