Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00455 and RALBFv3_RS00460 are separated by 17 nucleotides RALBFv3_RS00460 and RALBFv3_RS00465 are separated by 36 nucleotides RALBFv3_RS00465 and RALBFv3_RS00470 are separated by 66 nucleotides
RALBFv3_RS00455: RALBFv3_RS00455 - hypothetical protein, at 105,680 to 106,555
_RS00455
RALBFv3_RS00460: RALBFv3_RS00460 - short chain dehydrogenase, at 106,573 to 108,372
_RS00460
RALBFv3_RS00465: RALBFv3_RS00465 - metal-dependent hydrolase, at 108,409 to 109,305
_RS00465
RALBFv3_RS00470: RALBFv3_RS00470 - kinase/pyrophosphorylase, at 109,372 to 110,211
_RS00470
Position (kb) 106
107
108
109 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 105.753 kb on - strand at 106.320 kb on + strand, within RALBFv3_RS00455 at 106.321 kb on - strand, within RALBFv3_RS00455 at 106.644 kb on + strand at 106.645 kb on - strand at 106.783 kb on + strand, within RALBFv3_RS00460 at 106.784 kb on - strand, within RALBFv3_RS00460 at 106.784 kb on - strand, within RALBFv3_RS00460 at 106.795 kb on + strand, within RALBFv3_RS00460 at 106.847 kb on - strand, within RALBFv3_RS00460 at 107.114 kb on - strand, within RALBFv3_RS00460 at 107.357 kb on - strand, within RALBFv3_RS00460 at 107.404 kb on + strand, within RALBFv3_RS00460 at 108.199 kb on + strand at 108.424 kb on + strand at 108.425 kb on - strand at 108.565 kb on + strand, within RALBFv3_RS00465 at 108.565 kb on + strand, within RALBFv3_RS00465 at 108.679 kb on + strand, within RALBFv3_RS00465 at 108.679 kb on + strand, within RALBFv3_RS00465 at 108.680 kb on - strand, within RALBFv3_RS00465 at 108.680 kb on - strand, within RALBFv3_RS00465 at 108.988 kb on + strand, within RALBFv3_RS00465 at 109.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 105,753 - -0.0 106,320 + RALBFv3_RS00455 0.73 -1.1 106,321 - RALBFv3_RS00455 0.73 -1.1 106,644 + -1.1 106,645 - -0.1 106,783 + RALBFv3_RS00460 0.12 +0.2 106,784 - RALBFv3_RS00460 0.12 +0.4 106,784 - RALBFv3_RS00460 0.12 -1.8 106,795 + RALBFv3_RS00460 0.12 -0.3 106,847 - RALBFv3_RS00460 0.15 -0.3 107,114 - RALBFv3_RS00460 0.30 -0.5 107,357 - RALBFv3_RS00460 0.44 -0.8 107,404 + RALBFv3_RS00460 0.46 +1.8 108,199 + +0.7 108,424 + +1.0 108,425 - -0.9 108,565 + RALBFv3_RS00465 0.17 +1.2 108,565 + RALBFv3_RS00465 0.17 +2.8 108,679 + RALBFv3_RS00465 0.30 -0.7 108,679 + RALBFv3_RS00465 0.30 +0.1 108,680 - RALBFv3_RS00465 0.30 -0.6 108,680 - RALBFv3_RS00465 0.30 +0.3 108,988 + RALBFv3_RS00465 0.65 +0.2 109,237 + +0.4
Or see this region's nucleotide sequence