Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01691 and CCNA_01692 are separated by 32 nucleotides CCNA_01692 and CCNA_01693 are separated by 127 nucleotides
CCNA_01691: CCNA_01691 - tRNA/rRNA methyltransferase, at 1,817,814 to 1,819,091
_01691
CCNA_01692: CCNA_01692 - GMP synthase GuaA, at 1,819,124 to 1,820,686
_01692
CCNA_01693: CCNA_01693 - LysR-family transcriptional regulator, at 1,820,814 to 1,821,710
_01693
Position (kb)
1819
1820
1821 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1818.166 kb on + strand, within CCNA_01691 at 1818.229 kb on - strand, within CCNA_01691 at 1818.327 kb on + strand, within CCNA_01691 at 1818.335 kb on - strand, within CCNA_01691 at 1818.346 kb on - strand, within CCNA_01691 at 1818.348 kb on + strand, within CCNA_01691 at 1818.416 kb on + strand, within CCNA_01691 at 1818.417 kb on + strand, within CCNA_01691 at 1818.534 kb on + strand, within CCNA_01691 at 1818.572 kb on + strand, within CCNA_01691 at 1818.582 kb on + strand, within CCNA_01691 at 1818.688 kb on - strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.701 kb on - strand, within CCNA_01691 at 1818.703 kb on - strand, within CCNA_01691 at 1818.710 kb on - strand, within CCNA_01691 at 1818.815 kb on + strand, within CCNA_01691 at 1818.815 kb on + strand, within CCNA_01691 at 1818.820 kb on + strand, within CCNA_01691 at 1818.825 kb on + strand, within CCNA_01691 at 1818.825 kb on + strand, within CCNA_01691 at 1818.825 kb on + strand, within CCNA_01691 at 1818.830 kb on + strand, within CCNA_01691 at 1818.833 kb on - strand, within CCNA_01691 at 1818.885 kb on + strand, within CCNA_01691 at 1818.895 kb on + strand, within CCNA_01691 at 1818.926 kb on + strand, within CCNA_01691 at 1818.969 kb on - strand at 1818.993 kb on - strand at 1820.681 kb on + strand at 1820.847 kb on - strand at 1820.896 kb on - strand at 1820.903 kb on - strand at 1821.227 kb on - strand, within CCNA_01693 at 1821.276 kb on + strand, within CCNA_01693 at 1821.291 kb on + strand, within CCNA_01693 at 1821.327 kb on + strand, within CCNA_01693 at 1821.335 kb on - strand, within CCNA_01693 at 1821.347 kb on + strand, within CCNA_01693 at 1821.372 kb on + strand, within CCNA_01693 at 1821.396 kb on + strand, within CCNA_01693 at 1821.412 kb on - strand, within CCNA_01693 at 1821.421 kb on + strand, within CCNA_01693 at 1821.429 kb on - strand, within CCNA_01693 at 1821.429 kb on - strand, within CCNA_01693 at 1821.429 kb on - strand, within CCNA_01693 at 1821.474 kb on - strand, within CCNA_01693 at 1821.506 kb on + strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.614 kb on - strand, within CCNA_01693 at 1821.616 kb on + strand, within CCNA_01693 at 1821.619 kb on - strand, within CCNA_01693 at 1821.624 kb on - strand at 1821.629 kb on - strand at 1821.668 kb on - strand at 1821.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 1,818,166 + CCNA_01691 0.28 +1.5 1,818,229 - CCNA_01691 0.32 +0.3 1,818,327 + CCNA_01691 0.40 +1.5 1,818,335 - CCNA_01691 0.41 -1.0 1,818,346 - CCNA_01691 0.42 -0.2 1,818,348 + CCNA_01691 0.42 +0.9 1,818,416 + CCNA_01691 0.47 +1.5 1,818,417 + CCNA_01691 0.47 +1.8 1,818,534 + CCNA_01691 0.56 +1.0 1,818,572 + CCNA_01691 0.59 +1.4 1,818,582 + CCNA_01691 0.60 +0.6 1,818,688 - CCNA_01691 0.68 -1.1 1,818,693 + CCNA_01691 0.69 +1.0 1,818,693 + CCNA_01691 0.69 +1.0 1,818,701 - CCNA_01691 0.69 -1.7 1,818,703 - CCNA_01691 0.70 -1.7 1,818,710 - CCNA_01691 0.70 +0.3 1,818,815 + CCNA_01691 0.78 +0.5 1,818,815 + CCNA_01691 0.78 +0.8 1,818,820 + CCNA_01691 0.79 +0.3 1,818,825 + CCNA_01691 0.79 +0.6 1,818,825 + CCNA_01691 0.79 +0.8 1,818,825 + CCNA_01691 0.79 +0.8 1,818,830 + CCNA_01691 0.79 +1.4 1,818,833 - CCNA_01691 0.80 +2.1 1,818,885 + CCNA_01691 0.84 +0.8 1,818,895 + CCNA_01691 0.85 -0.3 1,818,926 + CCNA_01691 0.87 +1.0 1,818,969 - -0.2 1,818,993 - +0.3 1,820,681 + +2.1 1,820,847 - +0.2 1,820,896 - -1.4 1,820,903 - -1.6 1,821,227 - CCNA_01693 0.46 -1.5 1,821,276 + CCNA_01693 0.52 -0.7 1,821,291 + CCNA_01693 0.53 +0.0 1,821,327 + CCNA_01693 0.57 -0.4 1,821,335 - CCNA_01693 0.58 -2.5 1,821,347 + CCNA_01693 0.59 +0.6 1,821,372 + CCNA_01693 0.62 +0.5 1,821,396 + CCNA_01693 0.65 -2.7 1,821,412 - CCNA_01693 0.67 -2.4 1,821,421 + CCNA_01693 0.68 -2.0 1,821,429 - CCNA_01693 0.69 -1.6 1,821,429 - CCNA_01693 0.69 -2.0 1,821,429 - CCNA_01693 0.69 -0.5 1,821,474 - CCNA_01693 0.74 +0.6 1,821,506 + CCNA_01693 0.77 +0.0 1,821,543 - CCNA_01693 0.81 -0.8 1,821,543 - CCNA_01693 0.81 +0.5 1,821,543 - CCNA_01693 0.81 -0.8 1,821,556 + CCNA_01693 0.83 -2.1 1,821,564 - CCNA_01693 0.84 -1.4 1,821,614 - CCNA_01693 0.89 -0.7 1,821,616 + CCNA_01693 0.89 -0.1 1,821,619 - CCNA_01693 0.90 +0.5 1,821,624 - +0.3 1,821,629 - -0.8 1,821,668 - +1.7 1,821,683 + -0.3
Or see this region's nucleotide sequence