Experiment: R2A with Zinc 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19010 and CA265_RS19015 are separated by 18 nucleotides CA265_RS19015 and CA265_RS19020 are separated by 34 nucleotides CA265_RS19020 and CA265_RS19025 are separated by 47 nucleotides CA265_RS19025 and CA265_RS19030 are separated by 185 nucleotides CA265_RS19030 and CA265_RS19035 overlap by 23 nucleotides
CA265_RS19010: CA265_RS19010 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 4,731,083 to 4,732,501
_RS19010
CA265_RS19015: CA265_RS19015 - twin-arginine translocase TatA/TatE family subunit, at 4,732,520 to 4,732,696
_RS19015
CA265_RS19020: CA265_RS19020 - twin-arginine translocase TatA/TatE family subunit, at 4,732,731 to 4,733,090
_RS19020
CA265_RS19025: CA265_RS19025 - peptidase M23, at 4,733,138 to 4,734,433
_RS19025
CA265_RS19030: CA265_RS19030 - hypothetical protein, at 4,734,619 to 4,735,410
_RS19030
CA265_RS19035: CA265_RS19035 - hypothetical protein, at 4,735,388 to 4,737,085
_RS19035
Position (kb)
4733
4734
4735 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4733.201 kb on + strand at 4733.264 kb on + strand at 4733.265 kb on - strand at 4733.296 kb on - strand, within CA265_RS19025 at 4733.296 kb on - strand, within CA265_RS19025 at 4733.349 kb on - strand, within CA265_RS19025 at 4733.369 kb on - strand, within CA265_RS19025 at 4733.411 kb on - strand, within CA265_RS19025 at 4733.411 kb on - strand, within CA265_RS19025 at 4733.453 kb on - strand, within CA265_RS19025 at 4733.501 kb on + strand, within CA265_RS19025 at 4733.502 kb on - strand, within CA265_RS19025 at 4733.561 kb on - strand, within CA265_RS19025 at 4733.600 kb on - strand, within CA265_RS19025 at 4733.612 kb on - strand, within CA265_RS19025 at 4733.612 kb on - strand, within CA265_RS19025 at 4733.616 kb on - strand, within CA265_RS19025 at 4733.779 kb on + strand, within CA265_RS19025 at 4733.846 kb on - strand, within CA265_RS19025 at 4733.851 kb on + strand, within CA265_RS19025 at 4733.906 kb on - strand, within CA265_RS19025 at 4733.914 kb on + strand, within CA265_RS19025 at 4733.953 kb on + strand, within CA265_RS19025 at 4733.964 kb on + strand, within CA265_RS19025 at 4733.992 kb on + strand, within CA265_RS19025 at 4734.003 kb on - strand, within CA265_RS19025 at 4734.112 kb on - strand, within CA265_RS19025 at 4734.153 kb on - strand, within CA265_RS19025 at 4734.153 kb on - strand, within CA265_RS19025 at 4734.266 kb on + strand, within CA265_RS19025 at 4734.269 kb on - strand, within CA265_RS19025 at 4734.269 kb on - strand, within CA265_RS19025 at 4734.332 kb on + strand at 4734.333 kb on - strand at 4734.335 kb on - strand at 4734.559 kb on + strand at 4734.563 kb on + strand at 4734.564 kb on - strand at 4734.565 kb on + strand at 4734.565 kb on + strand at 4734.565 kb on + strand at 4734.566 kb on - strand at 4734.570 kb on + strand at 4734.570 kb on + strand at 4734.574 kb on + strand at 4734.605 kb on + strand at 4734.625 kb on + strand at 4734.652 kb on - strand at 4734.697 kb on + strand at 4734.751 kb on - strand, within CA265_RS19030 at 4734.757 kb on + strand, within CA265_RS19030 at 4734.788 kb on + strand, within CA265_RS19030 at 4734.794 kb on - strand, within CA265_RS19030 at 4734.924 kb on + strand, within CA265_RS19030 at 4734.924 kb on + strand, within CA265_RS19030 at 4734.924 kb on + strand, within CA265_RS19030 at 4734.982 kb on + strand, within CA265_RS19030 at 4734.982 kb on + strand, within CA265_RS19030 at 4734.983 kb on - strand, within CA265_RS19030 at 4734.983 kb on - strand, within CA265_RS19030 at 4734.991 kb on - strand, within CA265_RS19030 at 4735.029 kb on + strand, within CA265_RS19030 at 4735.081 kb on - strand, within CA265_RS19030 at 4735.124 kb on - strand, within CA265_RS19030 at 4735.181 kb on - strand, within CA265_RS19030 at 4735.208 kb on - strand, within CA265_RS19030 at 4735.237 kb on - strand, within CA265_RS19030 at 4735.290 kb on + strand, within CA265_RS19030 at 4735.290 kb on + strand, within CA265_RS19030 at 4735.348 kb on - strand at 4735.427 kb on + strand at 4735.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.08 mM remove 4,733,201 + +1.3 4,733,264 + -0.1 4,733,265 - +1.1 4,733,296 - CA265_RS19025 0.12 +2.5 4,733,296 - CA265_RS19025 0.12 -2.3 4,733,349 - CA265_RS19025 0.16 -1.2 4,733,369 - CA265_RS19025 0.18 +1.7 4,733,411 - CA265_RS19025 0.21 -2.2 4,733,411 - CA265_RS19025 0.21 +1.3 4,733,453 - CA265_RS19025 0.24 +1.1 4,733,501 + CA265_RS19025 0.28 +2.3 4,733,502 - CA265_RS19025 0.28 +2.1 4,733,561 - CA265_RS19025 0.33 -2.5 4,733,600 - CA265_RS19025 0.36 -0.4 4,733,612 - CA265_RS19025 0.37 +1.8 4,733,612 - CA265_RS19025 0.37 -0.8 4,733,616 - CA265_RS19025 0.37 -2.5 4,733,779 + CA265_RS19025 0.49 +2.3 4,733,846 - CA265_RS19025 0.55 -1.8 4,733,851 + CA265_RS19025 0.55 -1.1 4,733,906 - CA265_RS19025 0.59 -1.1 4,733,914 + CA265_RS19025 0.60 -1.1 4,733,953 + CA265_RS19025 0.63 -0.0 4,733,964 + CA265_RS19025 0.64 -0.1 4,733,992 + CA265_RS19025 0.66 -2.8 4,734,003 - CA265_RS19025 0.67 +1.3 4,734,112 - CA265_RS19025 0.75 +0.5 4,734,153 - CA265_RS19025 0.78 -1.2 4,734,153 - CA265_RS19025 0.78 +2.3 4,734,266 + CA265_RS19025 0.87 +0.9 4,734,269 - CA265_RS19025 0.87 -1.7 4,734,269 - CA265_RS19025 0.87 +3.0 4,734,332 + +0.3 4,734,333 - -1.9 4,734,335 - -1.5 4,734,559 + +0.5 4,734,563 + -1.1 4,734,564 - -0.2 4,734,565 + -1.4 4,734,565 + +0.1 4,734,565 + -0.4 4,734,566 - +0.9 4,734,570 + +1.2 4,734,570 + -0.7 4,734,574 + -0.2 4,734,605 + +0.8 4,734,625 + +0.5 4,734,652 - +1.9 4,734,697 + +1.7 4,734,751 - CA265_RS19030 0.17 +1.9 4,734,757 + CA265_RS19030 0.17 +1.9 4,734,788 + CA265_RS19030 0.21 +1.3 4,734,794 - CA265_RS19030 0.22 +1.3 4,734,924 + CA265_RS19030 0.39 +0.9 4,734,924 + CA265_RS19030 0.39 +1.5 4,734,924 + CA265_RS19030 0.39 +0.7 4,734,982 + CA265_RS19030 0.46 +1.8 4,734,982 + CA265_RS19030 0.46 +1.3 4,734,983 - CA265_RS19030 0.46 +1.4 4,734,983 - CA265_RS19030 0.46 +1.8 4,734,991 - CA265_RS19030 0.47 +2.2 4,735,029 + CA265_RS19030 0.52 +1.6 4,735,081 - CA265_RS19030 0.58 +1.6 4,735,124 - CA265_RS19030 0.64 +1.5 4,735,181 - CA265_RS19030 0.71 +1.6 4,735,208 - CA265_RS19030 0.74 +1.2 4,735,237 - CA265_RS19030 0.78 +1.2 4,735,290 + CA265_RS19030 0.85 +1.7 4,735,290 + CA265_RS19030 0.85 +2.7 4,735,348 - +1.1 4,735,427 + +0.8 4,735,428 - -0.2
Or see this region's nucleotide sequence