Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08275

Experiment: R2A with Zinc 0.08 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc 0.08 mM
2,050,289	+		CA265_RS08270	0.60	+0.5
2,050,289	+		CA265_RS08270	0.60	-0.0
2,050,290	-		CA265_RS08270	0.60	+0.4
2,050,290	-		CA265_RS08270	0.60	+0.2
2,050,291	+		CA265_RS08270	0.60	-1.0
2,050,385	+		CA265_RS08270	0.64	+0.3
2,050,386	-		CA265_RS08270	0.64	-0.2
2,050,478	-		CA265_RS08270	0.68	+0.2
2,050,501	+		CA265_RS08270	0.69	+0.3
2,050,562	+		CA265_RS08270	0.72	-0.2
2,050,569	-		CA265_RS08270	0.73	-0.4
2,050,570	+		CA265_RS08270	0.73	-0.3
2,050,571	-		CA265_RS08270	0.73	+0.4
2,050,575	-		CA265_RS08270	0.73	+0.2
2,050,607	+		CA265_RS08270	0.74	-1.2
2,050,643	+		CA265_RS08270	0.76	-1.4
2,050,687	+		CA265_RS08270	0.78	+0.2
2,050,688	-		CA265_RS08270	0.78	+0.1
2,050,693	-		CA265_RS08270	0.78	+1.0
2,050,725	+		CA265_RS08270	0.80	-0.1
2,050,788	-		CA265_RS08270	0.83	-0.3
2,050,790	-		CA265_RS08270	0.83	-0.1
2,050,849	-		CA265_RS08270	0.86	+0.5
2,050,916	+		CA265_RS08270	0.89	+0.2
2,050,916	+		CA265_RS08270	0.89	+0.5
2,050,921	-		CA265_RS08270	0.89	-1.1
2,050,932	+		CA265_RS08270	0.89	-0.9
2,050,967	+				+0.5
2,051,026	-				-0.5
2,051,048	-				-0.3
2,051,119	-				+0.7
2,051,179	-				+0.1
2,051,194	-				+0.4
2,051,268	+				+0.2
2,051,269	-				-1.0
2,051,283	+				+1.5
2,051,283	+				+0.0
2,051,290	+				-0.3
2,051,290	+				-0.1
2,051,301	-				-0.2
2,051,310	+				+0.7
2,051,310	+				-0.0
2,051,314	-				+0.2
2,051,366	+				-0.2
2,051,367	-				-0.4
2,051,405	-				-0.6
2,051,405	-				+0.5
2,051,408	+				-0.6
2,051,409	-				+0.1
2,051,431	+				+0.3
2,051,432	-				-0.8
2,051,479	-				+0.1
2,051,496	+				+0.1
2,051,496	+				-0.7
2,051,531	-				-1.2
2,051,531	-				+0.1
2,051,535	+				+0.1
2,051,535	+				+0.4
2,051,584	+				+0.2
2,051,654	+		CA265_RS08275	0.12	+0.5
2,051,654	+		CA265_RS08275	0.12	+0.1
2,051,655	-		CA265_RS08275	0.12	+0.1
2,051,687	+		CA265_RS08275	0.13	-0.2
2,051,687	+		CA265_RS08275	0.13	+0.3
2,051,715	+		CA265_RS08275	0.14	+0.3
2,051,716	-		CA265_RS08275	0.14	-0.3
2,051,784	+		CA265_RS08275	0.16	-0.1
2,051,785	-		CA265_RS08275	0.16	-0.4
2,051,838	+		CA265_RS08275	0.17	-0.0
2,051,839	-		CA265_RS08275	0.18	-1.0
2,051,927	-		CA265_RS08275	0.20	+0.6
2,051,985	+		CA265_RS08275	0.22	+0.1
2,051,985	+		CA265_RS08275	0.22	+0.6
2,051,986	-		CA265_RS08275	0.22	+0.7
2,052,008	-		CA265_RS08275	0.23	-0.2
2,052,040	-		CA265_RS08275	0.24	-0.0
2,052,161	+		CA265_RS08275	0.27	+0.2
2,052,162	-		CA265_RS08275	0.27	+0.9
2,052,210	+		CA265_RS08275	0.29	+0.6
2,052,287	-		CA265_RS08275	0.31	+1.1
2,052,294	+		CA265_RS08275	0.31	+0.5
2,052,337	-		CA265_RS08275	0.33	-0.2
2,052,349	-		CA265_RS08275	0.33	-0.2
2,052,379	-		CA265_RS08275	0.34	+0.1
2,052,389	-		CA265_RS08275	0.34	+0.9
2,052,476	+		CA265_RS08275	0.37	+0.5
2,052,485	-		CA265_RS08275	0.37	+0.3
2,052,487	+		CA265_RS08275	0.37	+0.4
2,052,488	-		CA265_RS08275	0.37	-1.7
2,052,490	-		CA265_RS08275	0.37	-0.4
2,052,516	+		CA265_RS08275	0.38	-0.5
2,052,596	-		CA265_RS08275	0.40	-0.2
2,052,596	-		CA265_RS08275	0.40	-0.6
2,052,596	-		CA265_RS08275	0.40	+0.5
2,052,738	+		CA265_RS08275	0.45	-0.5
2,052,739	-		CA265_RS08275	0.45	-0.7
2,052,748	-		CA265_RS08275	0.45	+0.5
2,052,769	-		CA265_RS08275	0.46	-0.1
2,052,772	+		CA265_RS08275	0.46	-0.5
2,052,773	-		CA265_RS08275	0.46	+0.7
2,052,773	-				-1.0
2,052,801	+		CA265_RS08275	0.47	+0.1
2,052,803	+		CA265_RS08275	0.47	-0.0
2,052,822	-		CA265_RS08275	0.47	+0.4
2,052,853	-		CA265_RS08275	0.48	+0.2
2,052,874	-		CA265_RS08275	0.49	+0.2
2,052,874	-		CA265_RS08275	0.49	-0.1
2,052,874	-		CA265_RS08275	0.49	+0.0
2,052,902	-		CA265_RS08275	0.50	-0.0
2,052,920	-		CA265_RS08275	0.50	+0.2
2,053,063	-		CA265_RS08275	0.55	-0.2
2,053,189	+		CA265_RS08275	0.58	+0.6
2,053,285	-		CA265_RS08275	0.61	-0.1
2,053,309	+		CA265_RS08275	0.62	-0.4
2,053,309	+		CA265_RS08275	0.62	+0.7
2,053,340	-		CA265_RS08275	0.63	-0.1
2,053,426	-		CA265_RS08275	0.66	-0.3
2,053,453	-		CA265_RS08275	0.66	+0.6
2,053,470	+		CA265_RS08275	0.67	+0.3
2,053,480	-		CA265_RS08275	0.67	+0.2
2,053,551	+		CA265_RS08275	0.69	-0.7
2,053,568	+		CA265_RS08275	0.70	-0.7
2,053,571	+		CA265_RS08275	0.70	-0.3
2,053,621	+		CA265_RS08275	0.71	+1.4
2,053,645	-		CA265_RS08275	0.72	-1.5
2,053,687	-		CA265_RS08275	0.73	+0.4
2,053,691	+		CA265_RS08275	0.74	+0.0
2,053,771	+		CA265_RS08275	0.76	-0.8
2,053,772	-		CA265_RS08275	0.76	+0.2
2,053,777	+		CA265_RS08275	0.76	+0.2
2,053,796	-		CA265_RS08275	0.77	+0.2
2,053,796	-		CA265_RS08275	0.77	-2.0
2,053,925	-		CA265_RS08275	0.81	-0.2
2,053,925	-		CA265_RS08275	0.81	-0.0
2,053,956	+		CA265_RS08275	0.82	+0.8
2,053,957	-		CA265_RS08275	0.82	+0.4
2,053,957	-		CA265_RS08275	0.82	+0.4
2,053,957	-		CA265_RS08275	0.82	+0.0
2,053,966	+		CA265_RS08275	0.82	-1.0
2,053,986	+		CA265_RS08275	0.82	-0.3
2,054,011	+		CA265_RS08275	0.83	+0.7
2,054,011	+		CA265_RS08275	0.83	+0.1
2,054,016	+		CA265_RS08275	0.83	+0.1
2,054,082	+		CA265_RS08275	0.85	+0.2
2,054,088	-		CA265_RS08275	0.86	-0.5
2,054,088	-		CA265_RS08275	0.86	+0.8
2,054,088	-		CA265_RS08275	0.86	-0.1
2,054,117	-		CA265_RS08275	0.86	+0.3
2,054,122	+		CA265_RS08275	0.87	+0.8
2,054,122	+		CA265_RS08275	0.87	+0.9
2,054,177	+		CA265_RS08275	0.88	-0.0
2,054,213	-		CA265_RS08275	0.89	+0.9
2,054,268	+				+0.3
2,054,268	+				+1.3
2,054,358	+				-1.4
2,054,570	+				-0.1
2,054,693	+		CA265_RS08280	0.11	-0.7
2,054,785	-		CA265_RS08280	0.20	-0.3
2,054,785	-		CA265_RS08280	0.20	+0.9
2,054,785	-		CA265_RS08280	0.20	+0.3
2,054,805	+		CA265_RS08280	0.22	-0.0
2,054,838	+		CA265_RS08280	0.25	-0.5
2,054,855	-		CA265_RS08280	0.26	-0.3
2,054,929	-		CA265_RS08280	0.33	-1.5
2,054,961	+		CA265_RS08280	0.36	+1.3
2,055,018	+		CA265_RS08280	0.42	-0.1
2,055,019	-		CA265_RS08280	0.42	+0.0
2,055,211	-		CA265_RS08280	0.60	-0.4
2,055,287	+		CA265_RS08280	0.67	-0.1
2,055,288	-		CA265_RS08280	0.67	-0.2
2,055,316	+		CA265_RS08280	0.70	+0.5
2,055,414	+		CA265_RS08280	0.79	-2.7
2,055,415	-		CA265_RS08280	0.79	+0.1
2,055,417	+		CA265_RS08280	0.79	-0.4
2,055,436	+		CA265_RS08280	0.81	+0.4
2,055,468	+		CA265_RS08280	0.84	+0.1
2,055,484	+		CA265_RS08280	0.85	-0.1
2,055,489	-		CA265_RS08280	0.86	-1.5
2,055,490	-		CA265_RS08280	0.86	+1.0