Experiment: R2A with Zinc 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00325 and CA265_RS00330 are separated by 93 nucleotides CA265_RS00330 and CA265_RS00335 are separated by 89 nucleotides CA265_RS00335 and CA265_RS00340 are separated by 52 nucleotides CA265_RS00340 and CA265_RS00345 are separated by 192 nucleotides
CA265_RS00325: CA265_RS00325 - hypothetical protein, at 74,985 to 75,440
_RS00325
CA265_RS00330: CA265_RS00330 - helix-turn-helix transcriptional regulator, at 75,534 to 76,295
_RS00330
CA265_RS00335: CA265_RS00335 - hypothetical protein, at 76,385 to 76,576
_RS00335
CA265_RS00340: CA265_RS00340 - hypothetical protein, at 76,629 to 77,345
_RS00340
CA265_RS00345: CA265_RS00345 - alpha-galactosidase, at 77,538 to 79,664
_RS00345
Position (kb) 76
77 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 75.387 kb on + strand, within CA265_RS00325 at 75.430 kb on + strand at 75.431 kb on - strand at 75.449 kb on + strand at 75.531 kb on + strand at 75.532 kb on - strand at 75.535 kb on + strand at 75.535 kb on + strand at 75.535 kb on + strand at 75.581 kb on + strand at 75.582 kb on - strand at 75.582 kb on - strand at 75.620 kb on - strand, within CA265_RS00330 at 75.803 kb on + strand, within CA265_RS00330 at 75.804 kb on - strand, within CA265_RS00330 at 75.804 kb on - strand, within CA265_RS00330 at 75.839 kb on + strand, within CA265_RS00330 at 75.840 kb on - strand, within CA265_RS00330 at 75.840 kb on - strand, within CA265_RS00330 at 75.914 kb on + strand, within CA265_RS00330 at 75.948 kb on - strand, within CA265_RS00330 at 75.953 kb on + strand, within CA265_RS00330 at 76.024 kb on - strand, within CA265_RS00330 at 76.080 kb on + strand, within CA265_RS00330 at 76.080 kb on + strand, within CA265_RS00330 at 76.081 kb on - strand, within CA265_RS00330 at 76.104 kb on + strand, within CA265_RS00330 at 76.162 kb on + strand, within CA265_RS00330 at 76.162 kb on + strand, within CA265_RS00330 at 76.165 kb on - strand, within CA265_RS00330 at 76.413 kb on + strand, within CA265_RS00335 at 76.420 kb on - strand, within CA265_RS00335 at 76.535 kb on - strand, within CA265_RS00335 at 76.587 kb on - strand at 76.605 kb on + strand at 76.700 kb on + strand at 76.719 kb on + strand, within CA265_RS00340 at 76.721 kb on + strand, within CA265_RS00340 at 76.721 kb on + strand, within CA265_RS00340 at 76.722 kb on - strand, within CA265_RS00340 at 76.742 kb on + strand, within CA265_RS00340 at 76.804 kb on + strand, within CA265_RS00340 at 76.858 kb on + strand, within CA265_RS00340 at 76.863 kb on - strand, within CA265_RS00340 at 76.924 kb on - strand, within CA265_RS00340 at 76.956 kb on - strand, within CA265_RS00340 at 76.964 kb on - strand, within CA265_RS00340 at 77.021 kb on + strand, within CA265_RS00340 at 77.022 kb on - strand, within CA265_RS00340 at 77.062 kb on - strand, within CA265_RS00340 at 77.078 kb on - strand, within CA265_RS00340 at 77.201 kb on + strand, within CA265_RS00340 at 77.202 kb on - strand, within CA265_RS00340 at 77.240 kb on - strand, within CA265_RS00340 at 77.242 kb on + strand, within CA265_RS00340 at 77.243 kb on - strand, within CA265_RS00340 at 77.251 kb on + strand, within CA265_RS00340 at 77.251 kb on + strand, within CA265_RS00340 at 77.252 kb on - strand, within CA265_RS00340 at 77.288 kb on - strand at 77.343 kb on + strand at 77.365 kb on - strand at 77.401 kb on + strand at 77.401 kb on + strand at 77.463 kb on - strand at 77.463 kb on - strand at 77.463 kb on - strand at 77.469 kb on + strand at 77.469 kb on + strand at 77.480 kb on + strand at 77.569 kb on + strand at 77.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.08 mM remove 75,387 + CA265_RS00325 0.88 -0.1 75,430 + +1.0 75,431 - +0.1 75,449 + -0.3 75,531 + +1.0 75,532 - +0.8 75,535 + -0.4 75,535 + -1.0 75,535 + +0.8 75,581 + +1.0 75,582 - -0.0 75,582 - +0.6 75,620 - CA265_RS00330 0.11 +0.4 75,803 + CA265_RS00330 0.35 -0.3 75,804 - CA265_RS00330 0.35 -0.7 75,804 - CA265_RS00330 0.35 -0.1 75,839 + CA265_RS00330 0.40 -1.2 75,840 - CA265_RS00330 0.40 +1.7 75,840 - CA265_RS00330 0.40 -0.2 75,914 + CA265_RS00330 0.50 +0.7 75,948 - CA265_RS00330 0.54 -2.2 75,953 + CA265_RS00330 0.55 +0.8 76,024 - CA265_RS00330 0.64 +0.2 76,080 + CA265_RS00330 0.72 +1.3 76,080 + CA265_RS00330 0.72 +0.1 76,081 - CA265_RS00330 0.72 -0.4 76,104 + CA265_RS00330 0.75 +0.8 76,162 + CA265_RS00330 0.82 +0.5 76,162 + CA265_RS00330 0.82 +0.7 76,165 - CA265_RS00330 0.83 -0.1 76,413 + CA265_RS00335 0.15 +3.1 76,420 - CA265_RS00335 0.18 -0.0 76,535 - CA265_RS00335 0.78 -0.1 76,587 - +0.0 76,605 + -0.9 76,700 + +0.5 76,719 + CA265_RS00340 0.13 -0.1 76,721 + CA265_RS00340 0.13 -0.5 76,721 + CA265_RS00340 0.13 +0.3 76,722 - CA265_RS00340 0.13 -0.5 76,742 + CA265_RS00340 0.16 -0.7 76,804 + CA265_RS00340 0.24 +0.3 76,858 + CA265_RS00340 0.32 -0.5 76,863 - CA265_RS00340 0.33 -0.5 76,924 - CA265_RS00340 0.41 +0.7 76,956 - CA265_RS00340 0.46 +0.2 76,964 - CA265_RS00340 0.47 +0.1 77,021 + CA265_RS00340 0.55 -0.3 77,022 - CA265_RS00340 0.55 +0.1 77,062 - CA265_RS00340 0.60 -0.0 77,078 - CA265_RS00340 0.63 +0.2 77,201 + CA265_RS00340 0.80 -0.5 77,202 - CA265_RS00340 0.80 +0.4 77,240 - CA265_RS00340 0.85 -0.1 77,242 + CA265_RS00340 0.85 -0.4 77,243 - CA265_RS00340 0.86 +1.0 77,251 + CA265_RS00340 0.87 -1.1 77,251 + CA265_RS00340 0.87 +0.5 77,252 - CA265_RS00340 0.87 -1.2 77,288 - -0.2 77,343 + +0.0 77,365 - +0.1 77,401 + +0.4 77,401 + +0.2 77,463 - +0.2 77,463 - +0.3 77,463 - -1.1 77,469 + +0.5 77,469 + +0.9 77,480 + +0.7 77,569 + +0.3 77,570 - +0.6
Or see this region's nucleotide sequence