Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_884 and Ac3H11_885 are separated by 22 nucleotides Ac3H11_885 and Ac3H11_886 are separated by 11 nucleotides Ac3H11_886 and Ac3H11_887 are separated by 125 nucleotides Ac3H11_887 and Ac3H11_888 are separated by 93 nucleotides Ac3H11_888 and Ac3H11_889 are separated by 26 nucleotides
Ac3H11_884 - Export protein, at 168,004 to 168,984
_884
Ac3H11_885 - hypothetical protein, at 169,007 to 169,168
_885
Ac3H11_886 - hypothetical protein, at 169,180 to 169,728
_886
Ac3H11_887 - putative exported protein, at 169,854 to 170,822
_887
Ac3H11_888 - hypothetical protein, at 170,916 to 171,173
_888
Ac3H11_889 - Salicylate hydroxylase (EC 1.14.13.1), at 171,200 to 172,846
_889
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 169.444 kb on + strand, within Ac3H11_886 at 169.444 kb on + strand, within Ac3H11_886 at 169.444 kb on + strand, within Ac3H11_886 at 169.444 kb on + strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.445 kb on - strand, within Ac3H11_886 at 169.447 kb on - strand, within Ac3H11_886 at 169.447 kb on - strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.474 kb on + strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.475 kb on - strand, within Ac3H11_886 at 169.489 kb on + strand, within Ac3H11_886 at 169.489 kb on + strand, within Ac3H11_886 at 169.658 kb on - strand, within Ac3H11_886 at 169.866 kb on + strand at 169.866 kb on + strand at 169.880 kb on + strand at 170.197 kb on + strand, within Ac3H11_887 at 170.198 kb on - strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.501 kb on - strand, within Ac3H11_887 at 170.501 kb on - strand, within Ac3H11_887 at 170.572 kb on + strand, within Ac3H11_887 at 170.593 kb on + strand, within Ac3H11_887 at 170.716 kb on + strand, within Ac3H11_887 at 171.131 kb on - strand, within Ac3H11_888 at 171.131 kb on - strand, within Ac3H11_888 at 171.294 kb on + strand at 171.295 kb on - strand at 171.732 kb on + strand, within Ac3H11_889 at 171.733 kb on - strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 169,444 + Ac3H11_886 0.48 -1.0 169,444 + Ac3H11_886 0.48 -0.4 169,444 + Ac3H11_886 0.48 -0.4 169,444 + Ac3H11_886 0.48 +0.8 169,445 - Ac3H11_886 0.48 -0.2 169,445 - Ac3H11_886 0.48 +0.2 169,445 - Ac3H11_886 0.48 -0.1 169,445 - Ac3H11_886 0.48 -0.0 169,447 - Ac3H11_886 0.49 +0.8 169,447 - Ac3H11_886 0.49 -2.8 169,474 + Ac3H11_886 0.54 +0.3 169,474 + Ac3H11_886 0.54 -1.6 169,474 + Ac3H11_886 0.54 +1.6 169,474 + Ac3H11_886 0.54 -0.3 169,474 + Ac3H11_886 0.54 +0.8 169,474 + Ac3H11_886 0.54 +0.2 169,474 + Ac3H11_886 0.54 -0.2 169,475 - Ac3H11_886 0.54 -0.1 169,475 - Ac3H11_886 0.54 -0.1 169,475 - Ac3H11_886 0.54 -0.1 169,475 - Ac3H11_886 0.54 -1.4 169,475 - Ac3H11_886 0.54 -0.8 169,475 - Ac3H11_886 0.54 -0.5 169,475 - Ac3H11_886 0.54 -0.3 169,475 - Ac3H11_886 0.54 -1.2 169,489 + Ac3H11_886 0.56 -0.5 169,489 + Ac3H11_886 0.56 -0.5 169,658 - Ac3H11_886 0.87 -2.4 169,866 + -1.0 169,866 + -0.9 169,880 + +0.3 170,197 + Ac3H11_887 0.35 +0.5 170,198 - Ac3H11_887 0.36 +0.3 170,500 + Ac3H11_887 0.67 +1.0 170,500 + Ac3H11_887 0.67 +1.1 170,500 + Ac3H11_887 0.67 +0.2 170,501 - Ac3H11_887 0.67 -0.3 170,501 - Ac3H11_887 0.67 -0.5 170,572 + Ac3H11_887 0.74 -0.6 170,593 + Ac3H11_887 0.76 -0.5 170,716 + Ac3H11_887 0.89 -0.3 171,131 - Ac3H11_888 0.83 +0.9 171,131 - Ac3H11_888 0.83 +1.1 171,294 + -0.7 171,295 - +1.3 171,732 + Ac3H11_889 0.32 -0.1 171,733 - Ac3H11_889 0.32 +0.2 171,750 + Ac3H11_889 0.33 -0.1 171,750 + Ac3H11_889 0.33 +0.7 171,750 + Ac3H11_889 0.33 -1.7 171,750 + Ac3H11_889 0.33 +0.3 171,751 - Ac3H11_889 0.33 +0.4 171,751 - Ac3H11_889 0.33 +0.0 171,751 - Ac3H11_889 0.33 +0.8 171,751 - Ac3H11_889 0.33 -1.6 171,751 - Ac3H11_889 0.33 -0.3 171,751 - Ac3H11_889 0.33 -2.0 171,751 - Ac3H11_889 0.33 +0.1
Or see this region's nucleotide sequence