Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4470

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4468 and Ac3H11_4469 overlap by 1 nucleotidesAc3H11_4469 and Ac3H11_4470 are separated by 231 nucleotidesAc3H11_4470 and Ac3H11_4471 are separated by 112 nucleotides Ac3H11_4468 - Phosphoheptose isomerase (EC 5.3.1.-), at 51,577 to 52,176 _4468 Ac3H11_4469 - 21 kDa hemolysin precursor, at 52,176 to 52,841 _4469 Ac3H11_4470 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 53,073 to 53,987 _4470 Ac3H11_4471 - Twitching motility protein PilT, at 54,100 to 55,236 _4471 Position (kb) 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 52.151 kb on + strandat 52.152 kb on - strandat 52.152 kb on - strandat 52.152 kb on - strandat 52.152 kb on - strandat 52.419 kb on + strand, within Ac3H11_4469at 52.419 kb on + strand, within Ac3H11_4469at 52.419 kb on + strand, within Ac3H11_4469at 52.420 kb on - strand, within Ac3H11_4469at 52.420 kb on - strand, within Ac3H11_4469at 52.665 kb on + strand, within Ac3H11_4469at 52.665 kb on + strand, within Ac3H11_4469at 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.075 kb on - strandat 53.075 kb on - strandat 53.075 kb on - strandat 53.075 kb on - strandat 53.102 kb on + strandat 53.103 kb on - strandat 53.103 kb on - strandat 53.140 kb on + strandat 53.140 kb on + strandat 53.140 kb on + strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.617 kb on + strand, within Ac3H11_4470at 53.617 kb on + strand, within Ac3H11_4470at 53.617 kb on + strand, within Ac3H11_4470at 53.617 kb on + strand, within Ac3H11_4470at 53.617 kb on + strand, within Ac3H11_4470at 53.617 kb on + strand, within Ac3H11_4470at 53.617 kb on + strand, within Ac3H11_4470at 53.617 kb on + strand, within Ac3H11_4470at 53.618 kb on - strand, within Ac3H11_4470at 53.618 kb on - strand, within Ac3H11_4470at 53.618 kb on - strand, within Ac3H11_4470at 53.618 kb on - strand, within Ac3H11_4470at 53.618 kb on - strand, within Ac3H11_4470at 53.860 kb on + strand, within Ac3H11_4470at 53.860 kb on + strand, within Ac3H11_4470at 53.860 kb on + strand, within Ac3H11_4470at 53.860 kb on + strand, within Ac3H11_4470at 53.861 kb on - strand, within Ac3H11_4470at 53.861 kb on - strand, within Ac3H11_4470at 53.861 kb on - strand, within Ac3H11_4470at 53.909 kb on - strandat 53.962 kb on + strandat 53.962 kb on + strandat 53.962 kb on + strandat 53.962 kb on + strandat 53.963 kb on - strandat 53.963 kb on - strandat 53.963 kb on - strandat 54.221 kb on + strand, within Ac3H11_4471at 54.221 kb on + strand, within Ac3H11_4471at 54.221 kb on + strand, within Ac3H11_4471at 54.222 kb on - strand, within Ac3H11_4471at 54.242 kb on + strand, within Ac3H11_4471at 54.242 kb on + strand, within Ac3H11_4471at 54.243 kb on - strand, within Ac3H11_4471at 54.243 kb on - strand, within Ac3H11_4471at 54.742 kb on + strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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52,151 + -1.7
52,152 - -2.6
52,152 - +0.4
52,152 - -2.9
52,152 - -2.9
52,419 + Ac3H11_4469 0.36 -2.5
52,419 + Ac3H11_4469 0.36 -1.1
52,419 + Ac3H11_4469 0.36 -3.9
52,420 - Ac3H11_4469 0.37 -0.7
52,420 - Ac3H11_4469 0.37 -1.3
52,665 + Ac3H11_4469 0.73 -1.0
52,665 + Ac3H11_4469 0.73 -1.4
53,074 + -1.1
53,074 + +0.1
53,074 + +1.9
53,074 + +0.7
53,074 + +0.4
53,074 + -1.0
53,074 + +0.3
53,074 + -0.2
53,074 + +1.1
53,074 + +0.6
53,075 - +0.3
53,075 - +0.7
53,075 - +1.1
53,075 - +0.4
53,102 + +1.0
53,103 - -0.5
53,103 - -0.3
53,140 + +1.0
53,140 + +0.1
53,140 + -0.3
53,141 - -0.5
53,141 - +1.5
53,141 - -0.7
53,141 - -0.5
53,141 - +0.4
53,141 - -0.1
53,617 + Ac3H11_4470 0.59 -0.1
53,617 + Ac3H11_4470 0.59 +0.4
53,617 + Ac3H11_4470 0.59 +0.4
53,617 + Ac3H11_4470 0.59 -0.5
53,617 + Ac3H11_4470 0.59 -0.5
53,617 + Ac3H11_4470 0.59 +0.1
53,617 + Ac3H11_4470 0.59 -0.1
53,617 + Ac3H11_4470 0.59 +1.0
53,618 - Ac3H11_4470 0.60 -0.5
53,618 - Ac3H11_4470 0.60 +0.7
53,618 - Ac3H11_4470 0.60 -0.2
53,618 - Ac3H11_4470 0.60 -0.7
53,618 - Ac3H11_4470 0.60 -0.2
53,860 + Ac3H11_4470 0.86 -0.6
53,860 + Ac3H11_4470 0.86 -0.7
53,860 + Ac3H11_4470 0.86 +0.8
53,860 + Ac3H11_4470 0.86 +0.9
53,861 - Ac3H11_4470 0.86 -0.4
53,861 - Ac3H11_4470 0.86 -0.0
53,861 - Ac3H11_4470 0.86 +1.3
53,909 - +1.4
53,962 + -0.7
53,962 + +0.0
53,962 + -0.1
53,962 + -0.7
53,963 - +0.7
53,963 - -0.1
53,963 - +0.2
54,221 + Ac3H11_4471 0.11 -0.7
54,221 + Ac3H11_4471 0.11 -0.6
54,221 + Ac3H11_4471 0.11 -0.8
54,222 - Ac3H11_4471 0.11 +0.0
54,242 + Ac3H11_4471 0.12 +0.2
54,242 + Ac3H11_4471 0.12 +0.5
54,243 - Ac3H11_4471 0.13 -0.7
54,243 - Ac3H11_4471 0.13 +0.1
54,742 + Ac3H11_4471 0.56 +0.0
54,743 - Ac3H11_4471 0.57 +1.8
54,743 - Ac3H11_4471 0.57 -0.8
54,743 - Ac3H11_4471 0.57 -0.0
54,743 - Ac3H11_4471 0.57 -0.4

Or see this region's nucleotide sequence