Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4310

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4308 and Ac3H11_4309 are separated by 116 nucleotidesAc3H11_4309 and Ac3H11_4310 are separated by 26 nucleotidesAc3H11_4310 and Ac3H11_4311 are separated by 303 nucleotides Ac3H11_4308 - Cysteine desulfurase (EC 2.8.1.7), at 83,053 to 85,140 _4308 Ac3H11_4309 - FIG00537998: hypothetical protein, at 85,257 to 86,069 _4309 Ac3H11_4310 - FIG00458971: hypothetical protein, at 86,096 to 86,680 _4310 Ac3H11_4311 - ABC-type dipeptide transport system, periplasmic component, at 86,984 to 88,411 _4311 Position (kb) 86 87Strain fitness (log2 ratio) -1 0 1 2at 85.766 kb on - strand, within Ac3H11_4309at 85.948 kb on + strand, within Ac3H11_4309at 85.948 kb on + strand, within Ac3H11_4309at 86.280 kb on + strand, within Ac3H11_4310at 86.649 kb on + strandat 86.650 kb on - strandat 86.811 kb on - strandat 86.811 kb on - strandat 86.867 kb on + strandat 86.868 kb on - strandat 86.868 kb on - strandat 86.872 kb on - strandat 86.872 kb on - strandat 86.872 kb on - strandat 86.874 kb on + strandat 86.874 kb on + strandat 86.874 kb on + strandat 86.874 kb on + strandat 86.875 kb on - strandat 86.875 kb on - strandat 87.141 kb on - strand, within Ac3H11_4311at 87.141 kb on - strand, within Ac3H11_4311at 87.236 kb on + strand, within Ac3H11_4311at 87.236 kb on + strand, within Ac3H11_4311at 87.236 kb on + strand, within Ac3H11_4311at 87.237 kb on - strand, within Ac3H11_4311at 87.311 kb on + strand, within Ac3H11_4311at 87.386 kb on + strand, within Ac3H11_4311at 87.386 kb on + strand, within Ac3H11_4311at 87.387 kb on - strand, within Ac3H11_4311at 87.395 kb on + strand, within Ac3H11_4311at 87.449 kb on + strand, within Ac3H11_4311at 87.449 kb on + strand, within Ac3H11_4311at 87.449 kb on + strand, within Ac3H11_4311at 87.680 kb on + strand, within Ac3H11_4311at 87.680 kb on + strand, within Ac3H11_4311at 87.680 kb on + strand, within Ac3H11_4311

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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85,766 - Ac3H11_4309 0.63 +1.1
85,948 + Ac3H11_4309 0.85 +0.7
85,948 + Ac3H11_4309 0.85 +0.3
86,280 + Ac3H11_4310 0.31 -0.5
86,649 + +0.6
86,650 - -1.2
86,811 - -0.7
86,811 - -0.8
86,867 + +0.5
86,868 - -0.7
86,868 - -0.6
86,872 - -0.2
86,872 - +0.2
86,872 - -0.3
86,874 + -0.5
86,874 + -0.2
86,874 + -0.2
86,874 + +1.0
86,875 - -0.1
86,875 - -0.3
87,141 - Ac3H11_4311 0.11 +0.5
87,141 - Ac3H11_4311 0.11 +0.2
87,236 + Ac3H11_4311 0.18 -0.5
87,236 + Ac3H11_4311 0.18 +0.0
87,236 + Ac3H11_4311 0.18 +1.9
87,237 - Ac3H11_4311 0.18 +1.8
87,311 + Ac3H11_4311 0.23 -1.1
87,386 + Ac3H11_4311 0.28 +0.2
87,386 + Ac3H11_4311 0.28 +0.8
87,387 - Ac3H11_4311 0.28 +0.4
87,395 + Ac3H11_4311 0.29 -0.7
87,449 + Ac3H11_4311 0.33 -1.3
87,449 + Ac3H11_4311 0.33 -0.4
87,449 + Ac3H11_4311 0.33 -0.4
87,680 + Ac3H11_4311 0.49 +0.4
87,680 + Ac3H11_4311 0.49 -1.0
87,680 + Ac3H11_4311 0.49 +0.1

Or see this region's nucleotide sequence