Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26385

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS26380 and AZOBR_RS26385 are separated by 258 nucleotidesAZOBR_RS26385 and AZOBR_RS26390 are separated by 44 nucleotides AZOBR_RS26380: AZOBR_RS26380 - GntR family transcriptional regulator, at 65,197 to 65,904 _RS26380 AZOBR_RS26385: AZOBR_RS26385 - transcriptional regulator, at 66,163 to 67,272 _RS26385 AZOBR_RS26390: AZOBR_RS26390 - deacylase, at 67,317 to 68,363 _RS26390 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1at 65.704 kb on + strand, within AZOBR_RS26380at 65.704 kb on + strand, within AZOBR_RS26380at 65.789 kb on - strand, within AZOBR_RS26380at 66.846 kb on - strand, within AZOBR_RS26385at 66.851 kb on + strand, within AZOBR_RS26385at 67.700 kb on - strand, within AZOBR_RS26390at 67.700 kb on - strand, within AZOBR_RS26390at 67.700 kb on - strand, within AZOBR_RS26390at 67.825 kb on + strand, within AZOBR_RS26390at 68.182 kb on + strand, within AZOBR_RS26390at 68.266 kb on + strandat 68.267 kb on - strandat 68.267 kb on - strandat 68.267 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
65,704 + AZOBR_RS26380 0.72 -2.7
65,704 + AZOBR_RS26380 0.72 +0.1
65,789 - AZOBR_RS26380 0.84 -1.3
66,846 - AZOBR_RS26385 0.62 -1.8
66,851 + AZOBR_RS26385 0.62 -1.5
67,700 - AZOBR_RS26390 0.37 +0.2
67,700 - AZOBR_RS26390 0.37 -0.2
67,700 - AZOBR_RS26390 0.37 -0.0
67,825 + AZOBR_RS26390 0.49 +1.3
68,182 + AZOBR_RS26390 0.83 -0.8
68,266 + +0.8
68,267 - +0.1
68,267 - -1.9
68,267 - +0.2

Or see this region's nucleotide sequence