Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18500

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18495 and AZOBR_RS18500 overlap by 1 nucleotidesAZOBR_RS18500 and AZOBR_RS18505 are separated by 410 nucleotides AZOBR_RS18495: AZOBR_RS18495 - metallophosphatase, at 915,457 to 916,713 _RS18495 AZOBR_RS18500: AZOBR_RS18500 - hypothetical protein, at 916,713 to 920,411 _RS18500 AZOBR_RS18505: AZOBR_RS18505 - hypothetical protein, at 920,822 to 921,049 _RS18505 Position (kb) 916 917 918 919 920 921Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 915.883 kb on + strand, within AZOBR_RS18495at 915.971 kb on - strand, within AZOBR_RS18495at 915.971 kb on - strand, within AZOBR_RS18495at 916.042 kb on + strand, within AZOBR_RS18495at 916.042 kb on + strand, within AZOBR_RS18495at 916.042 kb on + strand, within AZOBR_RS18495at 916.141 kb on + strand, within AZOBR_RS18495at 916.141 kb on + strand, within AZOBR_RS18495at 916.141 kb on + strand, within AZOBR_RS18495at 916.142 kb on - strand, within AZOBR_RS18495at 916.142 kb on - strand, within AZOBR_RS18495at 916.142 kb on - strand, within AZOBR_RS18495at 916.202 kb on - strand, within AZOBR_RS18495at 916.243 kb on + strand, within AZOBR_RS18495at 916.290 kb on + strand, within AZOBR_RS18495at 916.290 kb on + strand, within AZOBR_RS18495at 916.290 kb on + strand, within AZOBR_RS18495at 916.291 kb on - strand, within AZOBR_RS18495at 916.291 kb on - strandat 916.291 kb on - strand, within AZOBR_RS18495at 916.432 kb on + strand, within AZOBR_RS18495at 916.432 kb on + strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.436 kb on + strand, within AZOBR_RS18495at 916.436 kb on + strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 917.304 kb on + strand, within AZOBR_RS18500at 917.304 kb on + strand, within AZOBR_RS18500at 917.304 kb on + strand, within AZOBR_RS18500at 917.305 kb on - strand, within AZOBR_RS18500at 919.435 kb on - strand, within AZOBR_RS18500at 920.219 kb on + strandat 920.478 kb on + strandat 920.478 kb on + strandat 920.479 kb on - strandat 920.575 kb on + strandat 920.575 kb on + strandat 920.613 kb on + strandat 920.613 kb on + strandat 920.613 kb on + strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 921.036 kb on + strandat 921.036 kb on + strandat 921.036 kb on + strandat 921.036 kb on - strandat 921.037 kb on - strandat 921.037 kb on - strandat 921.037 kb on - strandat 921.069 kb on + strandat 921.070 kb on - strandat 921.070 kb on - strandat 921.159 kb on + strandat 921.159 kb on + strandat 921.159 kb on + strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.196 kb on - strandat 921.196 kb on - strandat 921.196 kb on - strandat 921.196 kb on - strandat 921.273 kb on + strandat 921.273 kb on + strandat 921.273 kb on + strandat 921.273 kb on + strandat 921.274 kb on - strandat 921.274 kb on - strandat 921.276 kb on + strandat 921.277 kb on - strandat 921.277 kb on - strandat 921.277 kb on - strandat 921.277 kb on - strandat 921.327 kb on + strandat 921.327 kb on + strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.330 kb on + strandat 921.330 kb on + strandat 921.331 kb on - strandat 921.331 kb on - strandat 921.390 kb on + strandat 921.391 kb on - strandat 921.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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915,883 + AZOBR_RS18495 0.34 +0.1
915,971 - AZOBR_RS18495 0.41 +0.4
915,971 - AZOBR_RS18495 0.41 -0.3
916,042 + AZOBR_RS18495 0.47 +0.7
916,042 + AZOBR_RS18495 0.47 +2.1
916,042 + AZOBR_RS18495 0.47 +0.0
916,141 + AZOBR_RS18495 0.54 +0.0
916,141 + AZOBR_RS18495 0.54 -0.1
916,141 + AZOBR_RS18495 0.54 +1.8
916,142 - AZOBR_RS18495 0.54 -0.9
916,142 - AZOBR_RS18495 0.54 -3.6
916,142 - AZOBR_RS18495 0.54 +0.2
916,202 - AZOBR_RS18495 0.59 +0.1
916,243 + AZOBR_RS18495 0.63 +0.0
916,290 + AZOBR_RS18495 0.66 -0.3
916,290 + AZOBR_RS18495 0.66 +0.2
916,290 + AZOBR_RS18495 0.66 -0.0
916,291 - AZOBR_RS18495 0.66 -0.3
916,291 - +2.8
916,291 - AZOBR_RS18495 0.66 -0.8
916,432 + AZOBR_RS18495 0.78 -0.7
916,432 + AZOBR_RS18495 0.78 +0.0
916,433 - AZOBR_RS18495 0.78 -0.1
916,433 - AZOBR_RS18495 0.78 +0.3
916,433 - AZOBR_RS18495 0.78 -0.4
916,433 - AZOBR_RS18495 0.78 -0.6
916,433 - AZOBR_RS18495 0.78 +0.4
916,436 + AZOBR_RS18495 0.78 +0.1
916,436 + AZOBR_RS18495 0.78 -0.5
916,437 - AZOBR_RS18495 0.78 -2.3
916,437 - AZOBR_RS18495 0.78 -0.4
916,437 - AZOBR_RS18495 0.78 +0.3
916,437 - AZOBR_RS18495 0.78 -0.2
916,437 - AZOBR_RS18495 0.78 -0.6
917,304 + AZOBR_RS18500 0.16 -0.7
917,304 + AZOBR_RS18500 0.16 -1.1
917,304 + AZOBR_RS18500 0.16 +0.2
917,305 - AZOBR_RS18500 0.16 -0.4
919,435 - AZOBR_RS18500 0.74 +0.2
920,219 + +0.2
920,478 + -0.5
920,478 + -0.5
920,479 - +0.5
920,575 + +0.0
920,575 + -1.6
920,613 + +0.2
920,613 + +0.0
920,613 + -0.0
920,614 - -0.2
920,614 - -0.3
920,614 - +0.2
920,614 - +0.2
920,614 - +0.1
920,614 - +0.1
920,614 - -0.0
920,614 - -0.3
921,036 + +0.4
921,036 + -0.5
921,036 + +0.1
921,036 - -0.1
921,037 - -0.5
921,037 - +0.6
921,037 - +0.0
921,069 + +1.2
921,070 - -0.2
921,070 - -0.2
921,159 + -0.5
921,159 + +0.2
921,159 + -0.7
921,160 - +0.2
921,160 - -1.3
921,160 - +0.9
921,160 - +0.6
921,160 - +0.4
921,160 - -0.4
921,160 - -1.2
921,196 - +0.7
921,196 - +0.1
921,196 - +1.0
921,196 - +0.4
921,273 + +0.1
921,273 + -0.4
921,273 + +0.1
921,273 + -1.3
921,274 - -0.6
921,274 - +0.1
921,276 + -0.4
921,277 - -0.1
921,277 - -0.1
921,277 - -0.3
921,277 - -0.2
921,327 + -1.5
921,327 + -0.4
921,328 - +0.4
921,328 - -0.2
921,328 - +0.2
921,328 - -0.1
921,328 - +0.1
921,328 - +0.1
921,330 + +0.2
921,330 + +0.1
921,331 - -0.8
921,331 - +0.0
921,390 + +0.5
921,391 - +0.6
921,391 - -0.1

Or see this region's nucleotide sequence