Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09795

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09790 and AZOBR_RS09795 are separated by 3 nucleotidesAZOBR_RS09795 and AZOBR_RS09800 are separated by 268 nucleotidesAZOBR_RS09800 and AZOBR_RS09805 are separated by 6 nucleotides AZOBR_RS09790: AZOBR_RS09790 - amino acid-binding protein, at 2,053,607 to 2,054,005 _RS09790 AZOBR_RS09795: AZOBR_RS09795 - hypothetical protein, at 2,054,009 to 2,055,883 _RS09795 AZOBR_RS09800: AZOBR_RS09800 - hypothetical protein, at 2,056,152 to 2,056,484 _RS09800 AZOBR_RS09805: AZOBR_RS09805 - peptide chain release factor I, at 2,056,491 to 2,056,910 _RS09805 Position (kb) 2054 2055 2056Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2053.913 kb on + strand, within AZOBR_RS09790at 2053.913 kb on + strand, within AZOBR_RS09790at 2053.914 kb on - strand, within AZOBR_RS09790at 2053.914 kb on - strand, within AZOBR_RS09790at 2053.926 kb on - strand, within AZOBR_RS09790at 2054.253 kb on + strand, within AZOBR_RS09795at 2054.254 kb on - strand, within AZOBR_RS09795at 2054.254 kb on - strand, within AZOBR_RS09795at 2054.664 kb on + strand, within AZOBR_RS09795at 2054.866 kb on - strand, within AZOBR_RS09795at 2054.866 kb on - strand, within AZOBR_RS09795at 2055.099 kb on + strand, within AZOBR_RS09795at 2055.099 kb on + strand, within AZOBR_RS09795at 2055.099 kb on + strand, within AZOBR_RS09795at 2055.100 kb on - strand, within AZOBR_RS09795at 2055.100 kb on - strand, within AZOBR_RS09795at 2055.133 kb on - strand, within AZOBR_RS09795at 2055.558 kb on + strand, within AZOBR_RS09795at 2055.558 kb on + strand, within AZOBR_RS09795at 2055.559 kb on - strand, within AZOBR_RS09795at 2055.765 kb on + strandat 2055.766 kb on - strandat 2056.018 kb on + strandat 2056.019 kb on - strandat 2056.040 kb on + strandat 2056.046 kb on + strandat 2056.047 kb on - strandat 2056.047 kb on - strandat 2056.225 kb on - strand, within AZOBR_RS09800at 2056.363 kb on - strand, within AZOBR_RS09800at 2056.363 kb on - strand, within AZOBR_RS09800at 2056.482 kb on + strandat 2056.483 kb on - strandat 2056.679 kb on - strand, within AZOBR_RS09805

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,053,913 + AZOBR_RS09790 0.77 -0.3
2,053,913 + AZOBR_RS09790 0.77 -0.1
2,053,914 - AZOBR_RS09790 0.77 -0.7
2,053,914 - AZOBR_RS09790 0.77 -0.4
2,053,926 - AZOBR_RS09790 0.80 -0.1
2,054,253 + AZOBR_RS09795 0.13 -0.1
2,054,254 - AZOBR_RS09795 0.13 +0.1
2,054,254 - AZOBR_RS09795 0.13 +0.2
2,054,664 + AZOBR_RS09795 0.35 -0.1
2,054,866 - AZOBR_RS09795 0.46 +0.1
2,054,866 - AZOBR_RS09795 0.46 -0.0
2,055,099 + AZOBR_RS09795 0.58 -0.5
2,055,099 + AZOBR_RS09795 0.58 -0.3
2,055,099 + AZOBR_RS09795 0.58 -0.6
2,055,100 - AZOBR_RS09795 0.58 -0.1
2,055,100 - AZOBR_RS09795 0.58 +0.1
2,055,133 - AZOBR_RS09795 0.60 -0.4
2,055,558 + AZOBR_RS09795 0.83 -0.2
2,055,558 + AZOBR_RS09795 0.83 -0.1
2,055,559 - AZOBR_RS09795 0.83 +0.2
2,055,765 + -0.7
2,055,766 - -0.1
2,056,018 + -4.1
2,056,019 - -0.6
2,056,040 + +0.3
2,056,046 + +0.8
2,056,047 - -0.1
2,056,047 - +0.3
2,056,225 - AZOBR_RS09800 0.22 +0.2
2,056,363 - AZOBR_RS09800 0.63 +0.3
2,056,363 - AZOBR_RS09800 0.63 +0.1
2,056,482 + -0.6
2,056,483 - -0.1
2,056,679 - AZOBR_RS09805 0.45 -0.4

Or see this region's nucleotide sequence