Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06500

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS06495 and AZOBR_RS06500 are separated by 159 nucleotidesAZOBR_RS06500 and AZOBR_RS06505 overlap by 4 nucleotides AZOBR_RS06495: AZOBR_RS06495 - ABC transporter substrate-binding protein, at 1,374,491 to 1,375,459 _RS06495 AZOBR_RS06500: AZOBR_RS06500 - ABC transporter permease, at 1,375,619 to 1,376,518 _RS06500 AZOBR_RS06505: AZOBR_RS06505 - ABC transporter ATP-binding protein, at 1,376,515 to 1,377,312 _RS06505 Position (kb) 1375 1376 1377Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1374.657 kb on - strand, within AZOBR_RS06495at 1374.983 kb on + strand, within AZOBR_RS06495at 1374.984 kb on - strand, within AZOBR_RS06495at 1375.136 kb on + strand, within AZOBR_RS06495at 1375.473 kb on - strandat 1375.473 kb on - strandat 1375.549 kb on + strandat 1375.549 kb on + strandat 1375.550 kb on - strandat 1375.665 kb on - strandat 1375.665 kb on - strandat 1375.688 kb on + strandat 1375.689 kb on - strandat 1375.689 kb on - strandat 1376.165 kb on + strand, within AZOBR_RS06500at 1376.364 kb on - strand, within AZOBR_RS06500at 1377.158 kb on - strand, within AZOBR_RS06505at 1377.158 kb on - strand, within AZOBR_RS06505at 1377.442 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
1,374,657 - AZOBR_RS06495 0.17 +0.2
1,374,983 + AZOBR_RS06495 0.51 -0.1
1,374,984 - AZOBR_RS06495 0.51 +1.3
1,375,136 + AZOBR_RS06495 0.67 +1.3
1,375,473 - -1.9
1,375,473 - -1.5
1,375,549 + +0.3
1,375,549 + -0.5
1,375,550 - +0.4
1,375,665 - -0.3
1,375,665 - +0.1
1,375,688 + +0.2
1,375,689 - -1.3
1,375,689 - +0.9
1,376,165 + AZOBR_RS06500 0.61 +2.9
1,376,364 - AZOBR_RS06500 0.83 +0.1
1,377,158 - AZOBR_RS06505 0.81 -1.0
1,377,158 - AZOBR_RS06505 0.81 -0.1
1,377,442 - -0.5

Or see this region's nucleotide sequence