Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04805

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04800 and AZOBR_RS04805 are separated by 18 nucleotidesAZOBR_RS04805 and AZOBR_RS04810 are separated by 60 nucleotides AZOBR_RS04800: AZOBR_RS04800 - pyruvate dehydrogenase subunit beta, at 1,009,419 to 1,010,450 _RS04800 AZOBR_RS04805: AZOBR_RS04805 - dihydrolipoyllysine acetyltransferase, at 1,010,469 to 1,011,602 _RS04805 AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448 _RS04810 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -1 0 1at 1009.636 kb on - strand, within AZOBR_RS04800at 1009.755 kb on + strand, within AZOBR_RS04800at 1009.755 kb on + strand, within AZOBR_RS04800at 1009.756 kb on - strand, within AZOBR_RS04800at 1009.756 kb on - strand, within AZOBR_RS04800at 1009.902 kb on + strand, within AZOBR_RS04800at 1009.902 kb on + strand, within AZOBR_RS04800at 1010.010 kb on + strand, within AZOBR_RS04800at 1010.010 kb on + strand, within AZOBR_RS04800at 1010.011 kb on - strand, within AZOBR_RS04800at 1010.011 kb on - strand, within AZOBR_RS04800at 1010.011 kb on - strand, within AZOBR_RS04800at 1010.370 kb on + strandat 1010.370 kb on + strandat 1010.370 kb on + strandat 1010.370 kb on + strandat 1010.371 kb on - strandat 1010.371 kb on - strandat 1010.371 kb on - strandat 1010.371 kb on - strandat 1010.371 kb on - strandat 1010.489 kb on + strandat 1010.489 kb on + strandat 1010.489 kb on + strandat 1010.686 kb on - strand, within AZOBR_RS04805at 1010.853 kb on + strand, within AZOBR_RS04805at 1010.964 kb on + strand, within AZOBR_RS04805at 1010.965 kb on - strand, within AZOBR_RS04805at 1010.965 kb on - strand, within AZOBR_RS04805at 1010.965 kb on - strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.318 kb on + strand, within AZOBR_RS04805at 1011.318 kb on + strand, within AZOBR_RS04805at 1012.508 kb on + strandat 1012.508 kb on + strandat 1012.508 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,009,636 - AZOBR_RS04800 0.21 -0.3
1,009,755 + AZOBR_RS04800 0.33 -0.4
1,009,755 + AZOBR_RS04800 0.33 +0.3
1,009,756 - AZOBR_RS04800 0.33 -0.6
1,009,756 - AZOBR_RS04800 0.33 +0.0
1,009,902 + AZOBR_RS04800 0.47 -0.3
1,009,902 + AZOBR_RS04800 0.47 +0.4
1,010,010 + AZOBR_RS04800 0.57 +0.7
1,010,010 + AZOBR_RS04800 0.57 +0.3
1,010,011 - AZOBR_RS04800 0.57 +0.1
1,010,011 - AZOBR_RS04800 0.57 +0.2
1,010,011 - AZOBR_RS04800 0.57 +0.2
1,010,370 + -1.3
1,010,370 + -0.1
1,010,370 + +0.2
1,010,370 + -0.8
1,010,371 - +0.3
1,010,371 - +0.5
1,010,371 - +0.3
1,010,371 - -0.2
1,010,371 - -0.2
1,010,489 + +0.1
1,010,489 + -0.4
1,010,489 + +0.6
1,010,686 - AZOBR_RS04805 0.19 -0.6
1,010,853 + AZOBR_RS04805 0.34 +0.1
1,010,964 + AZOBR_RS04805 0.44 +0.3
1,010,965 - AZOBR_RS04805 0.44 -0.2
1,010,965 - AZOBR_RS04805 0.44 -1.4
1,010,965 - AZOBR_RS04805 0.44 +0.2
1,011,204 + AZOBR_RS04805 0.65 +0.4
1,011,204 + AZOBR_RS04805 0.65 +0.5
1,011,204 + AZOBR_RS04805 0.65 +0.4
1,011,204 + AZOBR_RS04805 0.65 +0.4
1,011,318 + AZOBR_RS04805 0.75 -0.1
1,011,318 + AZOBR_RS04805 0.75 +0.4
1,012,508 + +0.4
1,012,508 + -0.2
1,012,508 + -0.2

Or see this region's nucleotide sequence