Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4633

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
5,493,094	+		Psyr_4632	0.48	+0.7
5,493,123	+		Psyr_4632	0.50	+1.3
5,493,123	+		Psyr_4632	0.50	+0.7
5,493,123	+		Psyr_4632	0.50	-2.4
5,493,124	-		Psyr_4632	0.50	-0.0
5,493,124	-		Psyr_4632	0.50	-0.5
5,493,188	+		Psyr_4632	0.55	-0.6
5,493,188	+		Psyr_4632	0.55	-0.4
5,493,188	+		Psyr_4632	0.55	+0.2
5,493,188	+		Psyr_4632	0.55	-0.6
5,493,188	+		Psyr_4632	0.55	+0.8
5,493,189	-		Psyr_4632	0.55	-1.7
5,493,189	-		Psyr_4632	0.55	-1.1
5,493,189	-		Psyr_4632	0.55	-1.0
5,493,189	-		Psyr_4632	0.55	+1.0
5,493,189	-		Psyr_4632	0.55	+0.7
5,493,189	-		Psyr_4632	0.55	-0.2
5,493,311	+		Psyr_4632	0.65	-1.0
5,493,311	+		Psyr_4632	0.65	+1.1
5,493,311	+		Psyr_4632	0.65	+1.1
5,493,311	+		Psyr_4632	0.65	+0.9
5,493,311	+		Psyr_4632	0.65	+0.3
5,493,311	+		Psyr_4632	0.65	-1.8
5,493,312	-		Psyr_4632	0.65	+1.3
5,493,312	-		Psyr_4632	0.65	-0.1
5,493,312	-		Psyr_4632	0.65	+0.7
5,493,328	+		Psyr_4632	0.66	+0.3
5,493,328	+		Psyr_4632	0.66	+0.4
5,493,328	+		Psyr_4632	0.66	-2.0
5,493,328	+		Psyr_4632	0.66	+0.3
5,493,328	+		Psyr_4632	0.66	+0.1
5,493,328	+		Psyr_4632	0.66	+0.5
5,493,329	-		Psyr_4632	0.66	+0.5
5,493,329	-		Psyr_4632	0.66	+4.6
5,493,329	-		Psyr_4632	0.66	-0.2
5,493,329	-		Psyr_4632	0.66	+0.8
5,493,332	+		Psyr_4632	0.66	-1.4
5,493,332	+		Psyr_4632	0.66	-0.3
5,493,332	+		Psyr_4632	0.66	-0.1
5,493,332	+		Psyr_4632	0.66	-0.3
5,493,332	+		Psyr_4632	0.66	+0.9
5,493,332	+		Psyr_4632	0.66	+0.6
5,493,333	-		Psyr_4632	0.66	+1.3
5,493,333	-		Psyr_4632	0.66	-1.3
5,493,333	-		Psyr_4632	0.66	-1.7
5,493,496	+		Psyr_4632	0.79	-0.1
5,493,496	+		Psyr_4632	0.79	+2.1
5,493,496	+		Psyr_4632	0.79	+0.1
5,493,497	-		Psyr_4632	0.79	+2.1
5,493,501	-		Psyr_4632	0.80	+0.6
5,493,501	-		Psyr_4632	0.80	+1.1
5,493,501	-		Psyr_4632	0.80	+0.9
5,493,593	+		Psyr_4632	0.87	-2.8
5,493,593	+		Psyr_4632	0.87	+1.4
5,493,594	-		Psyr_4632	0.87	+0.3
5,493,596	+		Psyr_4632	0.87	-1.3
5,493,596	+		Psyr_4632	0.87	+0.3
5,493,596	+		Psyr_4632	0.87	-0.5
5,493,596	+		Psyr_4632	0.87	-0.5
5,493,596	+		Psyr_4632	0.87	-1.4
5,493,596	+		Psyr_4632	0.87	-0.4
5,493,596	+		Psyr_4632	0.87	-1.5
5,493,597	-		Psyr_4632	0.87	-0.1
5,493,597	-		Psyr_4632	0.87	-2.3
5,493,597	-		Psyr_4632	0.87	-0.4
5,493,602	+		Psyr_4632	0.88	-0.9
5,493,602	+		Psyr_4632	0.88	+2.3
5,493,602	+		Psyr_4632	0.88	-0.3
5,493,602	+		Psyr_4632	0.88	+1.1
5,493,603	-		Psyr_4632	0.88	+0.2
5,493,603	-		Psyr_4632	0.88	-1.1
5,493,603	-		Psyr_4632	0.88	-0.4
5,493,603	-		Psyr_4632	0.88	-1.4
5,493,603	-		Psyr_4632	0.88	-0.3
5,493,603	-		Psyr_4632	0.88	-0.6
5,493,603	-		Psyr_4632	0.88	-0.1
5,493,603	-		Psyr_4632	0.88	+0.7
5,493,603	-		Psyr_4632	0.88	-0.8
5,493,648	-				-2.4
5,493,712	+				+1.3
5,493,713	-				-0.3
5,493,713	-				-0.1
5,493,713	-				+0.3
5,493,717	-				+0.9
5,493,717	-				+0.6
5,493,829	+				+0.8
5,493,873	+				+0.2
5,493,878	-				+0.1
5,493,925	+		Psyr_4633	0.11	-0.5
5,493,926	-		Psyr_4633	0.11	-0.1
5,493,926	-		Psyr_4633	0.11	+0.3
5,493,926	-		Psyr_4633	0.11	-0.3
5,493,952	+		Psyr_4633	0.12	+2.1
5,494,001	-		Psyr_4633	0.16	+3.3
5,494,064	-		Psyr_4633	0.20	-0.5
5,494,120	+		Psyr_4633	0.23	-1.8
5,494,128	+		Psyr_4633	0.24	+0.0
5,494,150	+		Psyr_4633	0.25	-0.7
5,494,150	+		Psyr_4633	0.25	-0.2
5,494,150	+		Psyr_4633	0.25	-1.8
5,494,150	+		Psyr_4633	0.25	-1.5
5,494,150	+		Psyr_4633	0.25	-1.0
5,494,150	+		Psyr_4633	0.25	-0.3
5,494,150	+		Psyr_4633	0.25	+1.9
5,494,150	+		Psyr_4633	0.25	+0.9
5,494,150	+		Psyr_4633	0.25	-1.3
5,494,150	+		Psyr_4633	0.25	+0.3
5,494,150	+		Psyr_4633	0.25	+0.2
5,494,150	+		Psyr_4633	0.25	-1.8
5,494,150	+		Psyr_4633	0.25	+0.1
5,494,151	-		Psyr_4633	0.25	-0.7
5,494,192	+		Psyr_4633	0.28	+0.2
5,494,192	+		Psyr_4633	0.28	-0.2
5,494,192	+		Psyr_4633	0.28	-0.9
5,494,193	-		Psyr_4633	0.28	-1.1
5,494,213	+		Psyr_4633	0.29	-0.0
5,494,213	+		Psyr_4633	0.29	-1.3
5,494,213	+		Psyr_4633	0.29	+0.7
5,494,213	+		Psyr_4633	0.29	+0.6
5,494,213	+		Psyr_4633	0.29	+0.6
5,494,213	+		Psyr_4633	0.29	-2.0
5,494,213	+		Psyr_4633	0.29	-0.0
5,494,213	+		Psyr_4633	0.29	-1.3
5,494,213	+		Psyr_4633	0.29	+0.3
5,494,213	+		Psyr_4633	0.29	+0.6
5,494,213	+		Psyr_4633	0.29	-0.7
5,494,213	+		Psyr_4633	0.29	+1.2
5,494,213	+		Psyr_4633	0.29	-0.6
5,494,213	+		Psyr_4633	0.29	-0.6
5,494,213	+		Psyr_4633	0.29	-0.4
5,494,213	+		Psyr_4633	0.29	-0.3
5,494,214	-		Psyr_4633	0.29	-0.9
5,494,214	-		Psyr_4633	0.29	-0.7
5,494,214	-		Psyr_4633	0.29	+1.1
5,494,214	-		Psyr_4633	0.29	+0.1
5,494,214	-		Psyr_4633	0.29	-0.5
5,494,214	-		Psyr_4633	0.29	+1.3
5,494,214	-		Psyr_4633	0.29	+0.2
5,494,214	-		Psyr_4633	0.29	-0.6
5,494,214	-		Psyr_4633	0.29	-0.4
5,494,214	-		Psyr_4633	0.29	-0.1
5,494,214	-		Psyr_4633	0.29	-0.3
5,494,214	-		Psyr_4633	0.29	-0.6
5,494,306	+		Psyr_4633	0.35	-2.1
5,494,306	+		Psyr_4633	0.35	-0.7
5,494,307	-		Psyr_4633	0.35	-2.4
5,494,307	-		Psyr_4633	0.35	-0.3
5,494,307	-		Psyr_4633	0.35	+1.3
5,494,480	+		Psyr_4633	0.46	-1.0
5,494,480	+		Psyr_4633	0.46	-1.0
5,494,480	+		Psyr_4633	0.46	+0.2
5,494,481	-		Psyr_4633	0.46	+0.2
5,494,481	-		Psyr_4633	0.46	-0.3
5,494,481	-		Psyr_4633	0.46	+0.5
5,494,481	-		Psyr_4633	0.46	+0.6
5,494,558	+		Psyr_4633	0.51	+0.3
5,494,558	+		Psyr_4633	0.51	+0.3
5,494,558	+		Psyr_4633	0.51	+0.1
5,494,558	+		Psyr_4633	0.51	+0.4
5,494,558	+		Psyr_4633	0.51	-0.2
5,494,558	+		Psyr_4633	0.51	-1.6
5,494,558	+		Psyr_4633	0.51	+0.6
5,494,559	-		Psyr_4633	0.51	-0.3
5,494,559	-		Psyr_4633	0.51	-0.3
5,494,559	-		Psyr_4633	0.51	+0.2
5,494,559	-		Psyr_4633	0.51	-0.6
5,494,559	-		Psyr_4633	0.51	-1.8
5,494,559	-		Psyr_4633	0.51	-0.2
5,494,565	-		Psyr_4633	0.52	-0.9
5,494,618	+		Psyr_4633	0.55	+0.9
5,494,618	+		Psyr_4633	0.55	-1.3
5,494,619	-		Psyr_4633	0.55	-0.8
5,494,619	-		Psyr_4633	0.55	-1.2
5,494,640	-		Psyr_4633	0.56	+0.3
5,494,729	+		Psyr_4633	0.62	-0.3
5,494,729	+		Psyr_4633	0.62	+0.1
5,494,730	-		Psyr_4633	0.62	-0.1
5,494,730	-		Psyr_4633	0.62	+0.7
5,494,732	+		Psyr_4633	0.62	+1.0
5,494,732	+		Psyr_4633	0.62	-0.8
5,494,733	-		Psyr_4633	0.62	-1.3
5,494,733	-		Psyr_4633	0.62	-1.7
5,494,741	-		Psyr_4633	0.63	+0.0
5,494,771	+		Psyr_4633	0.65	-0.7
5,494,771	+		Psyr_4633	0.65	-1.2
5,494,771	+		Psyr_4633	0.65	-2.2
5,494,771	+		Psyr_4633	0.65	-1.1
5,494,771	+		Psyr_4633	0.65	+0.1
5,494,772	-		Psyr_4633	0.65	-0.7
5,494,772	-		Psyr_4633	0.65	-1.3
5,494,909	+		Psyr_4633	0.74	-1.9
5,494,909	+		Psyr_4633	0.74	-1.3
5,494,909	+		Psyr_4633	0.74	+0.3
5,494,910	-		Psyr_4633	0.74	-0.2
5,494,910	-		Psyr_4633	0.74	-0.1
5,495,030	+		Psyr_4633	0.81	-2.8
5,495,030	+		Psyr_4633	0.81	+0.3
5,495,031	-		Psyr_4633	0.82	-0.3
5,495,045	-		Psyr_4633	0.82	+0.5
5,495,045	-		Psyr_4633	0.82	-0.6
5,495,080	+		Psyr_4633	0.85	-0.8
5,495,080	+		Psyr_4633	0.85	+0.0
5,495,080	+		Psyr_4633	0.85	-2.3
5,495,080	+		Psyr_4633	0.85	+1.3
5,495,081	-		Psyr_4633	0.85	-0.1
5,495,081	-		Psyr_4633	0.85	+0.6
5,495,081	-		Psyr_4633	0.85	-0.7
5,495,081	-		Psyr_4633	0.85	-0.3
5,495,299	-				-0.3
5,495,317	+				-0.8
5,495,341	-				-0.5
5,495,404	-				-0.1
5,495,426	+				+0.3
5,495,426	+				+0.0
5,495,426	+				-0.3
5,495,426	+				-1.0
5,496,093	+		Psyr_4634	0.55	-1.0
5,496,105	+		Psyr_4634	0.56	-1.1