Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4339

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
5,190,696	+		Psyr_4338	0.53	+0.2
5,190,696	+		Psyr_4338	0.53	-1.1
5,190,696	+		Psyr_4338	0.53	-0.7
5,190,697	-		Psyr_4338	0.53	+0.4
5,190,814	+		Psyr_4338	0.60	-3.8
5,190,814	+		Psyr_4338	0.60	+0.1
5,190,814	+		Psyr_4338	0.60	-0.8
5,190,814	+		Psyr_4338	0.60	+0.6
5,190,814	+		Psyr_4338	0.60	+0.7
5,190,815	-		Psyr_4338	0.60	-0.4
5,190,831	+		Psyr_4338	0.61	+0.3
5,190,832	-		Psyr_4338	0.61	-0.5
5,190,972	+		Psyr_4338	0.70	+1.2
5,190,973	-		Psyr_4338	0.70	-0.6
5,191,098	+		Psyr_4338	0.78	+0.3
5,191,098	+		Psyr_4338	0.78	+0.1
5,191,098	+		Psyr_4338	0.78	-0.1
5,191,098	+		Psyr_4338	0.78	+0.9
5,191,098	+		Psyr_4338	0.78	+3.8
5,191,098	+		Psyr_4338	0.78	-0.6
5,191,098	+		Psyr_4338	0.78	-0.6
5,191,098	+		Psyr_4338	0.78	+0.2
5,191,099	-		Psyr_4338	0.78	+1.1
5,191,099	-		Psyr_4338	0.78	-0.1
5,191,099	-		Psyr_4338	0.78	+0.3
5,191,197	+		Psyr_4338	0.84	-0.6
5,191,198	-		Psyr_4338	0.84	-1.0
5,191,321	-				-0.6
5,191,488	+				-1.4
5,191,488	+				+1.0
5,191,488	+				+1.9
5,191,488	+				-0.3
5,191,489	-				-1.1
5,191,489	-				-0.6
5,191,489	-				+0.2
5,191,489	-				+0.2
5,191,489	-				-0.8
5,191,489	-				+0.8
5,191,489	-				+0.3
5,191,499	+				-1.6
5,191,499	+				-0.4
5,191,500	-				+1.8
5,191,566	+				+0.4
5,191,567	-				+0.5
5,191,580	+				+0.2
5,191,581	-				-1.7
5,191,581	-				+1.2
5,191,592	+				+0.2
5,191,592	+				-0.2
5,191,593	-				+2.3
5,191,593	-				+0.0
5,191,593	-				+0.1
5,191,594	+				+0.0
5,191,594	+				+0.5
5,191,594	+				+0.2
5,191,595	-				+0.9
5,191,595	-				+0.8
5,191,595	-				+1.4
5,191,595	-				+0.6
5,191,671	+				-0.1
5,191,815	-		Psyr_4339	0.11	-1.1
5,191,877	+		Psyr_4339	0.14	-0.0
5,191,877	+		Psyr_4339	0.14	+0.0
5,191,878	-		Psyr_4339	0.14	-0.1
5,191,878	-		Psyr_4339	0.14	-0.2
5,192,020	-		Psyr_4339	0.21	-0.3
5,192,129	+		Psyr_4339	0.26	-0.6
5,192,129	+		Psyr_4339	0.26	+0.6
5,192,130	-		Psyr_4339	0.26	+0.3
5,192,130	-		Psyr_4339	0.26	-1.1
5,192,130	-		Psyr_4339	0.26	+1.2
5,192,130	-		Psyr_4339	0.26	+0.5
5,192,130	-		Psyr_4339	0.26	+1.2
5,192,130	-		Psyr_4339	0.26	-0.9
5,192,219	+		Psyr_4339	0.31	+0.2
5,192,219	+		Psyr_4339	0.31	+0.6
5,192,219	+		Psyr_4339	0.31	+1.8
5,192,219	+		Psyr_4339	0.31	+0.4
5,192,219	+		Psyr_4339	0.31	+1.3
5,192,219	+		Psyr_4339	0.31	+1.0
5,192,219	+		Psyr_4339	0.31	-0.1
5,192,219	+		Psyr_4339	0.31	-0.8
5,192,220	-		Psyr_4339	0.31	-0.9
5,192,220	-		Psyr_4339	0.31	+0.3
5,192,220	-		Psyr_4339	0.31	+1.2
5,192,220	-		Psyr_4339	0.31	-0.4
5,192,220	-		Psyr_4339	0.31	-0.6
5,192,220	-		Psyr_4339	0.31	+0.8
5,192,220	-		Psyr_4339	0.31	+0.2
5,192,220	-		Psyr_4339	0.31	+0.3
5,192,220	-		Psyr_4339	0.31	+1.1
5,192,220	-		Psyr_4339	0.31	+1.9
5,192,331	+		Psyr_4339	0.36	-0.1
5,192,331	+		Psyr_4339	0.36	+0.6
5,192,331	+		Psyr_4339	0.36	+0.7
5,192,332	-		Psyr_4339	0.36	+0.8
5,192,332	-		Psyr_4339	0.36	-1.0
5,192,332	-		Psyr_4339	0.36	+0.5
5,192,332	-		Psyr_4339	0.36	+0.1
5,192,332	-		Psyr_4339	0.36	+0.4
5,192,489	+		Psyr_4339	0.44	-1.4
5,192,489	+		Psyr_4339	0.44	-0.2
5,192,489	+		Psyr_4339	0.44	-0.8
5,192,489	+		Psyr_4339	0.44	-0.1
5,192,490	-		Psyr_4339	0.44	+1.3
5,192,490	-		Psyr_4339	0.44	-0.2
5,192,490	-		Psyr_4339	0.44	+1.3
5,192,490	-		Psyr_4339	0.44	+0.8
5,192,490	-		Psyr_4339	0.44	+0.2
5,192,490	-		Psyr_4339	0.44	+0.2
5,192,490	-		Psyr_4339	0.44	+0.6
5,192,505	+		Psyr_4339	0.45	-0.1
5,192,505	+		Psyr_4339	0.45	-2.1
5,192,505	+		Psyr_4339	0.45	+0.9
5,192,505	+		Psyr_4339	0.45	-1.0
5,192,505	+		Psyr_4339	0.45	+1.0
5,192,506	-		Psyr_4339	0.45	+0.1
5,192,506	-		Psyr_4339	0.45	-0.8
5,192,506	-		Psyr_4339	0.45	-0.4
5,192,506	-		Psyr_4339	0.45	+2.2
5,192,506	-		Psyr_4339	0.45	-1.2
5,192,506	-		Psyr_4339	0.45	-3.0
5,192,509	-		Psyr_4339	0.45	+0.4
5,192,516	+		Psyr_4339	0.45	+1.2
5,192,583	-		Psyr_4339	0.49	-0.0
5,192,631	-		Psyr_4339	0.51	+0.3
5,192,631	-		Psyr_4339	0.51	+1.1
5,192,706	+		Psyr_4339	0.55	+1.1
5,192,813	-		Psyr_4339	0.60	-0.3
5,192,813	-		Psyr_4339	0.60	+0.6
5,192,813	-		Psyr_4339	0.60	-0.7
5,192,813	-		Psyr_4339	0.60	+0.2
5,192,875	+		Psyr_4339	0.63	+1.0
5,192,875	+		Psyr_4339	0.63	+0.5
5,192,875	+		Psyr_4339	0.63	-0.1
5,192,875	+		Psyr_4339	0.63	+0.8
5,192,876	-		Psyr_4339	0.63	+1.0
5,192,876	-		Psyr_4339	0.63	-1.1
5,192,876	-		Psyr_4339	0.63	+0.8
5,192,879	+		Psyr_4339	0.63	+1.0
5,192,880	-		Psyr_4339	0.63	-0.2
5,192,880	-		Psyr_4339	0.63	+1.0
5,192,933	+		Psyr_4339	0.66	+1.9
5,192,933	+		Psyr_4339	0.66	-0.1
5,192,933	+		Psyr_4339	0.66	+0.2
5,192,933	+		Psyr_4339	0.66	-0.2
5,192,933	+		Psyr_4339	0.66	-0.7
5,192,933	+		Psyr_4339	0.66	-0.0
5,192,933	+		Psyr_4339	0.66	-0.1
5,192,933	+		Psyr_4339	0.66	+1.2
5,192,934	-		Psyr_4339	0.66	+0.5
5,192,934	-		Psyr_4339	0.66	+0.3
5,192,934	-		Psyr_4339	0.66	+0.0
5,192,934	-		Psyr_4339	0.66	+0.2
5,192,934	-		Psyr_4339	0.66	+0.1
5,192,934	-		Psyr_4339	0.66	+0.3
5,192,934	-		Psyr_4339	0.66	-0.4
5,192,934	-		Psyr_4339	0.66	+0.8
5,192,934	-		Psyr_4339	0.66	+0.7
5,192,934	-		Psyr_4339	0.66	-1.9
5,192,934	-		Psyr_4339	0.66	-0.4
5,192,942	+		Psyr_4339	0.66	-0.8
5,192,942	+		Psyr_4339	0.66	+1.2
5,192,942	+		Psyr_4339	0.66	+0.7
5,192,942	+		Psyr_4339	0.66	-0.8
5,192,942	+		Psyr_4339	0.66	-0.1
5,192,943	-		Psyr_4339	0.66	+1.0
5,192,945	+		Psyr_4339	0.67	+0.9
5,192,946	-		Psyr_4339	0.67	+1.0
5,192,946	-		Psyr_4339	0.67	-0.5
5,192,946	-		Psyr_4339	0.67	-0.5
5,192,946	-		Psyr_4339	0.67	+0.9
5,192,946	-		Psyr_4339	0.67	+0.2
5,192,946	-		Psyr_4339	0.67	+1.2
5,192,951	+		Psyr_4339	0.67	+1.2
5,192,951	+		Psyr_4339	0.67	+0.2
5,192,951	+		Psyr_4339	0.67	-0.3
5,192,952	-		Psyr_4339	0.67	-0.6
5,192,952	-		Psyr_4339	0.67	-0.9
5,192,952	-		Psyr_4339	0.67	-0.6
5,192,952	-		Psyr_4339	0.67	-0.5
5,192,952	-		Psyr_4339	0.67	+1.0
5,192,952	-		Psyr_4339	0.67	-0.4
5,192,975	+		Psyr_4339	0.68	-0.4
5,192,975	+		Psyr_4339	0.68	+1.4
5,192,975	+		Psyr_4339	0.68	+0.2
5,192,976	-		Psyr_4339	0.68	+0.1
5,192,976	-		Psyr_4339	0.68	-0.8
5,192,976	-		Psyr_4339	0.68	-0.6
5,192,979	+		Psyr_4339	0.68	+0.6
5,192,979	+		Psyr_4339	0.68	+0.2
5,192,980	-		Psyr_4339	0.68	+1.0
5,192,980	-		Psyr_4339	0.68	+0.6
5,192,990	+		Psyr_4339	0.69	+1.2
5,192,990	+		Psyr_4339	0.69	+0.0
5,192,990	+		Psyr_4339	0.69	-0.1
5,192,990	+		Psyr_4339	0.69	+0.5
5,192,990	+		Psyr_4339	0.69	+1.6
5,192,991	-		Psyr_4339	0.69	-0.5
5,192,991	-		Psyr_4339	0.69	+0.9
5,192,991	-		Psyr_4339	0.69	+2.2
5,193,017	+		Psyr_4339	0.70	+1.0
5,193,017	+		Psyr_4339	0.70	+0.8
5,193,018	-		Psyr_4339	0.70	+0.2
5,193,036	-		Psyr_4339	0.71	+0.5
5,193,061	-		Psyr_4339	0.72	+0.2
5,193,061	-		Psyr_4339	0.72	+0.3
5,193,061	-		Psyr_4339	0.72	+0.2
5,193,061	-		Psyr_4339	0.72	+2.1
5,193,061	-		Psyr_4339	0.72	-0.5
5,193,062	+		Psyr_4339	0.72	+2.2
5,193,062	+		Psyr_4339	0.72	+2.0
5,193,062	+		Psyr_4339	0.72	+0.5
5,193,062	+		Psyr_4339	0.72	+0.9
5,193,062	+		Psyr_4339	0.72	+1.4
5,193,062	+		Psyr_4339	0.72	-0.4
5,193,062	+		Psyr_4339	0.72	-0.8
5,193,062	+		Psyr_4339	0.72	-0.9
5,193,062	+		Psyr_4339	0.72	+1.2
5,193,062	+		Psyr_4339	0.72	-0.4
5,193,063	-		Psyr_4339	0.72	+0.9
5,193,063	-		Psyr_4339	0.72	+0.2
5,193,063	-		Psyr_4339	0.72	+0.3
5,193,063	-		Psyr_4339	0.72	+0.3
5,193,063	-		Psyr_4339	0.72	+0.0
5,193,063	-		Psyr_4339	0.72	-0.4
5,193,063	-		Psyr_4339	0.72	-0.1
5,193,063	-		Psyr_4339	0.72	+0.6
5,193,084	-		Psyr_4339	0.73	+1.0
5,193,084	-		Psyr_4339	0.73	-0.3
5,193,084	-		Psyr_4339	0.73	-0.6
5,193,084	-		Psyr_4339	0.73	+1.1
5,193,117	+		Psyr_4339	0.75	-1.1
5,193,118	-		Psyr_4339	0.75	-0.5
5,193,125	+		Psyr_4339	0.75	+0.4
5,193,125	+		Psyr_4339	0.75	+0.4
5,193,125	+		Psyr_4339	0.75	-0.3
5,193,125	+		Psyr_4339	0.75	+0.4
5,193,125	+		Psyr_4339	0.75	-2.1
5,193,125	+		Psyr_4339	0.75	+0.7
5,193,125	+		Psyr_4339	0.75	-0.0
5,193,125	+		Psyr_4339	0.75	+0.4
5,193,126	-		Psyr_4339	0.75	+0.9
5,193,126	-		Psyr_4339	0.75	+1.2
5,193,126	-		Psyr_4339	0.75	-1.7
5,193,126	-		Psyr_4339	0.75	-0.9
5,193,126	-		Psyr_4339	0.75	-1.3
5,193,126	-		Psyr_4339	0.75	+0.9
5,193,170	+		Psyr_4339	0.78	+0.1
5,193,170	+		Psyr_4339	0.78	+0.7
5,193,170	+		Psyr_4339	0.78	-0.6
5,193,170	+		Psyr_4339	0.78	+3.1
5,193,171	-		Psyr_4339	0.78	-0.6
5,193,171	-		Psyr_4339	0.78	+1.3
5,193,171	-		Psyr_4339	0.78	-1.8
5,193,171	-		Psyr_4339	0.78	+0.7
5,193,171	-		Psyr_4339	0.78	-1.5
5,193,171	-		Psyr_4339	0.78	-0.6
5,193,171	-		Psyr_4339	0.78	+0.6
5,193,260	+		Psyr_4339	0.82	+0.0
5,193,412	-		Psyr_4339	0.90	+0.5
5,193,478	+				+0.7
5,193,579	-				-0.1
5,193,599	+				+0.9
5,193,599	+				-0.2
5,193,599	+				+0.8
5,193,599	+				+0.9
5,193,600	-				+0.7
5,193,600	-				+0.2
5,193,600	-				-0.4
5,193,629	+				+1.0
5,193,629	+				-0.7
5,193,630	-				+1.2
5,193,630	-				+2.2
5,193,697	+				+1.2
5,193,697	+				-1.1
5,193,697	+				+0.4
5,193,697	+				-0.1
5,193,697	+				+1.3
5,193,697	+				+0.4
5,193,697	+				-1.3
5,193,697	+				+0.6
5,193,697	+				+0.9
5,193,697	+				+0.2
5,193,697	+				+1.5
5,193,698	-				-1.4
5,193,698	-				+1.2
5,193,698	-				-0.1
5,193,698	-				+0.2
5,193,698	-				-0.0
5,193,698	-				+0.1
5,193,698	-				+0.4
5,193,698	-				-1.1
5,193,698	-				+1.2
5,193,698	-				+0.4
5,193,698	-				+1.2
5,193,698	-				+0.3
5,193,698	-				+1.9
5,193,699	+				+0.9
5,193,699	+				+1.4
5,193,700	-				+1.2
5,193,700	-				-1.0
5,193,716	-				+0.6
5,193,716	-				+0.5
5,193,767	+				+0.0
5,193,767	+				+1.0
5,193,768	-				-0.4
5,193,768	-				-1.6
5,193,804	+				+0.0
5,193,804	+				+0.4
5,193,804	+				-1.0
5,193,810	+				+0.7
5,193,810	+				-0.5
5,193,810	+				+0.9
5,193,810	+				+1.0
5,193,810	+				+1.2
5,193,810	+				+0.9
5,193,810	+				-1.9
5,193,810	+				+0.5
5,193,810	+				-0.1
5,193,811	-				-0.4
5,193,811	-				-0.2
5,193,811	-				+1.8
5,193,811	-				+1.9
5,193,811	-				+1.0
5,193,811	-				+1.5
5,193,840	-				-0.2
5,193,932	-				+1.3
5,193,938	-				+0.9
5,193,956	+				-1.1
5,193,956	+				-0.8
5,193,956	+				+1.6
5,193,956	+				+0.2
5,193,956	+				+0.3
5,193,956	+				-1.1
5,193,956	+				+0.2
5,193,956	+				-0.4
5,193,956	+				-0.4
5,193,957	-				-0.7
5,193,957	-				-0.6
5,193,957	-				-1.4
5,193,957	-				-1.4
5,193,960	+				+0.9
5,193,960	+				+0.7
5,193,960	+				+1.2
5,193,960	+				-0.6
5,193,960	+				-0.8
5,193,960	+				-0.3
5,193,960	+				+0.5
5,193,960	+				+0.5
5,193,960	+				-0.4
5,193,960	+				-0.2
5,193,960	+				-1.6
5,193,960	+				+0.7
5,193,960	+				+0.2
5,193,960	+				+1.2
5,193,960	+				+0.0
5,193,960	+				+0.2
5,193,960	+				+0.1
5,193,960	+				+0.7
5,193,960	+				+0.1
5,193,960	+				-0.6
5,193,960	+				+1.4
5,193,960	+				-1.4
5,193,960	+				+0.2
5,193,960	+				-0.2
5,193,960	+				+0.4
5,193,960	+				-0.0
5,193,960	+				+2.8
5,193,960	+				-0.6
5,193,960	+				+1.6
5,193,960	+				-0.1
5,193,961	-				-0.4
5,193,961	-				-0.8
5,193,961	-				-1.0
5,193,961	-				-0.8
5,193,961	-				-1.0
5,193,961	-				-3.3
5,193,961	-				-0.4
5,193,961	-				-0.2
5,193,961	-				-2.7
5,193,961	-				-1.5
5,193,961	-				-0.8
5,193,961	-				-1.0
5,193,961	-				-1.0
5,193,961	-				+1.1
5,193,962	+				+0.8
5,193,962	+				-1.6
5,193,963	-				-1.5
5,193,976	+				+1.2
5,193,976	+				-0.4
5,194,004	+				-0.5
5,194,033	+		Psyr_4340	0.10	-0.2
5,194,033	+		Psyr_4340	0.10	-1.8
5,194,033	+		Psyr_4340	0.10	-0.8
5,194,033	+		Psyr_4340	0.10	-1.6
5,194,033	+		Psyr_4340	0.10	-0.8
5,194,033	+		Psyr_4340	0.10	-2.0
5,194,033	+		Psyr_4340	0.10	-0.4
5,194,033	+		Psyr_4340	0.10	-0.1
5,194,033	+		Psyr_4340	0.10	-0.3
5,194,033	+		Psyr_4340	0.10	-1.4
5,194,033	+		Psyr_4340	0.10	-0.7
5,194,034	-		Psyr_4340	0.10	-1.3
5,194,034	-		Psyr_4340	0.10	-1.7
5,194,034	-				-0.8
5,194,034	-		Psyr_4340	0.10	-0.8
5,194,034	-		Psyr_4340	0.10	-1.6
5,194,034	-		Psyr_4340	0.10	-1.0
5,194,034	-		Psyr_4340	0.10	+2.0
5,194,034	-		Psyr_4340	0.10	-2.0
5,194,034	-		Psyr_4340	0.10	-0.8
5,194,034	-		Psyr_4340	0.10	-0.8
5,194,034	-		Psyr_4340	0.10	+0.6
5,194,085	+		Psyr_4340	0.17	-0.4
5,194,180	+		Psyr_4340	0.29	+0.7
5,194,180	+		Psyr_4340	0.29	-1.3
5,194,180	+		Psyr_4340	0.29	-0.6
5,194,180	+		Psyr_4340	0.29	-1.6
5,194,181	-		Psyr_4340	0.29	-1.1
5,194,286	-		Psyr_4340	0.42	-1.4
5,194,419	-		Psyr_4340	0.59	+0.0
5,194,444	+		Psyr_4340	0.62	-0.1
5,194,445	-		Psyr_4340	0.62	-1.5
5,194,461	+		Psyr_4340	0.64	+0.2
5,194,461	+		Psyr_4340	0.64	-1.1
5,194,462	-		Psyr_4340	0.64	-2.0
5,194,515	+		Psyr_4340	0.71	-1.8
5,194,515	+		Psyr_4340	0.71	+1.2
5,194,515	+		Psyr_4340	0.71	+0.2
5,194,569	+		Psyr_4340	0.77	+1.2
5,194,569	+		Psyr_4340	0.77	-3.1
5,194,569	+		Psyr_4340	0.77	+0.6
5,194,570	-		Psyr_4340	0.78	-1.4
5,194,570	-		Psyr_4340	0.78	-1.3
5,194,570	-		Psyr_4340	0.78	-1.6