Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4020

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
4,786,293	+				-0.8
4,786,293	+				-0.1
4,786,293	+				-0.2
4,786,294	-				-1.4
4,786,294	-				+0.4
4,786,371	+				-0.3
4,786,372	-				-0.6
4,786,396	+				+0.9
4,786,396	+				+0.1
4,786,396	+				+0.5
4,786,397	-				-1.3
4,786,506	-				-0.5
4,786,506	-				-0.8
4,786,517	+				+0.1
4,786,518	-				-0.4
4,786,518	-				+1.2
4,786,518	-				+0.6
4,786,570	+				+0.6
4,786,581	+				-0.8
4,786,581	+				-0.9
4,786,581	+				+0.3
4,786,582	-				-1.3
4,786,582	-				-0.8
4,786,582	-				-2.3
4,786,611	+				+1.2
4,786,615	+				+0.1
4,786,634	+				-0.1
4,786,643	+				-0.1
4,786,643	+				-1.8
4,786,646	+				-1.3
4,786,646	+				+0.7
4,786,681	+				+0.1
4,786,681	+				-1.5
4,786,681	+				+1.3
4,786,681	+				+0.5
4,786,682	-				-1.7
4,786,682	-				-0.4
4,786,883	+		Psyr_4019	0.50	+1.1
4,786,884	-		Psyr_4019	0.50	+1.1
4,786,911	+		Psyr_4019	0.57	+0.8
4,786,912	-		Psyr_4019	0.57	+0.5
4,786,951	+		Psyr_4019	0.68	+0.5
4,786,951	+		Psyr_4019	0.68	+0.2
4,786,951	+		Psyr_4019	0.68	-0.3
4,786,951	+		Psyr_4019	0.68	-0.3
4,786,952	-		Psyr_4019	0.68	+0.1
4,786,952	-		Psyr_4019	0.68	-0.7
4,786,952	-		Psyr_4019	0.68	+0.9
4,787,151	-				-1.4
4,787,199	-				+0.4
4,787,240	+				-1.4
4,787,362	+		Psyr_4020	0.15	-0.7
4,787,499	+		Psyr_4020	0.25	-0.5
4,787,499	+		Psyr_4020	0.25	-1.7
4,787,499	+		Psyr_4020	0.25	+0.9
4,787,499	+		Psyr_4020	0.25	+0.5
4,787,499	+		Psyr_4020	0.25	-1.3
4,787,500	-		Psyr_4020	0.25	+1.7
4,787,500	-		Psyr_4020	0.25	+0.4
4,787,500	-		Psyr_4020	0.25	+0.2
4,787,501	+		Psyr_4020	0.25	-1.5
4,787,501	+		Psyr_4020	0.25	-0.4
4,787,501	+		Psyr_4020	0.25	-2.8
4,787,501	+		Psyr_4020	0.25	-0.5
4,787,502	-		Psyr_4020	0.25	-0.3
4,787,502	-		Psyr_4020	0.25	+0.1
4,787,502	-		Psyr_4020	0.25	-1.6
4,787,502	-		Psyr_4020	0.25	-0.5
4,787,547	+		Psyr_4020	0.28	-1.5
4,787,548	-		Psyr_4020	0.28	+0.5
4,787,693	+		Psyr_4020	0.38	-1.7
4,787,693	+		Psyr_4020	0.38	-0.1
4,787,694	-		Psyr_4020	0.38	+0.9
4,787,694	-		Psyr_4020	0.38	-0.4
4,787,695	+		Psyr_4020	0.38	-0.6
4,787,695	+		Psyr_4020	0.38	-2.1
4,787,696	-		Psyr_4020	0.38	+0.7
4,787,696	-		Psyr_4020	0.38	+0.6
4,787,696	-		Psyr_4020	0.38	-1.4
4,787,696	-		Psyr_4020	0.38	+1.3
4,787,696	-		Psyr_4020	0.38	-1.1
4,787,752	+		Psyr_4020	0.42	-0.0
4,787,752	+		Psyr_4020	0.42	-0.9
4,787,752	+		Psyr_4020	0.42	-1.2
4,787,753	-		Psyr_4020	0.42	-0.8
4,787,753	-		Psyr_4020	0.42	+1.2
4,787,753	-		Psyr_4020	0.42	-0.5
4,787,753	-		Psyr_4020	0.42	-0.4
4,787,754	+		Psyr_4020	0.42	+0.1
4,787,754	+		Psyr_4020	0.42	-1.5
4,787,754	+		Psyr_4020	0.42	-0.3
4,787,754	+		Psyr_4020	0.42	-2.3
4,787,755	-		Psyr_4020	0.42	+0.1
4,787,755	-		Psyr_4020	0.42	-0.2
4,787,755	-		Psyr_4020	0.42	+0.1
4,787,756	+		Psyr_4020	0.43	-1.1
4,787,756	+		Psyr_4020	0.43	-1.9
4,787,757	-		Psyr_4020	0.43	-1.4
4,787,757	-		Psyr_4020	0.43	-2.0
4,787,757	-		Psyr_4020	0.43	+2.1
4,787,771	+		Psyr_4020	0.44	-0.5
4,787,772	-		Psyr_4020	0.44	-1.1
4,787,772	-		Psyr_4020	0.44	-1.5
4,787,880	+		Psyr_4020	0.51	-0.5
4,787,881	-		Psyr_4020	0.51	+0.1
4,787,881	-		Psyr_4020	0.51	+0.3
4,787,912	-		Psyr_4020	0.53	-1.7
4,787,912	-		Psyr_4020	0.53	-0.8
4,787,912	-		Psyr_4020	0.53	-1.1
4,787,979	+		Psyr_4020	0.58	+0.4
4,787,980	-		Psyr_4020	0.58	+0.7
4,787,980	-		Psyr_4020	0.58	+1.0
4,787,980	-		Psyr_4020	0.58	-0.7
4,787,980	-		Psyr_4020	0.58	+0.3
4,787,980	-		Psyr_4020	0.58	+1.1
4,787,980	-		Psyr_4020	0.58	-0.1
4,787,985	+		Psyr_4020	0.59	-0.5
4,787,986	-		Psyr_4020	0.59	+0.5
4,787,986	-		Psyr_4020	0.59	-1.0
4,788,076	+		Psyr_4020	0.65	-1.1
4,788,077	-		Psyr_4020	0.65	-0.2
4,788,163	-		Psyr_4020	0.71	+1.1
4,788,163	-		Psyr_4020	0.71	+0.1
4,788,225	+		Psyr_4020	0.75	+0.2
4,788,291	+		Psyr_4020	0.80	-1.9
4,788,292	-		Psyr_4020	0.80	-0.6
4,788,332	+		Psyr_4020	0.83	-1.7
4,788,332	+		Psyr_4020	0.83	+1.5
4,788,332	+		Psyr_4020	0.83	-0.8
4,788,333	-		Psyr_4020	0.83	+0.6
4,788,333	-		Psyr_4020	0.83	-0.3
4,788,333	-		Psyr_4020	0.83	-0.7
4,788,333	-		Psyr_4020	0.83	-2.7
4,788,555	+				-0.5
4,788,611	-				-2.3
4,788,645	+				-1.5
4,788,673	-				+0.5
4,788,683	+				-1.7
4,788,702	+				-0.8
4,788,703	-				+1.1
4,788,703	-				-0.2
4,788,717	-				+2.1
4,788,720	+				+0.9
4,788,720	+				-0.1
4,788,721	-				+3.4
4,788,721	-				-0.4
4,788,721	-				+0.5
4,788,721	-				-0.6
4,788,848	-		Psyr_4021	0.12	-1.3
4,788,951	+		Psyr_4021	0.27	+0.7
4,789,010	+		Psyr_4021	0.35	-0.1
4,789,010	+		Psyr_4021	0.35	+0.1
4,789,010	+		Psyr_4021	0.35	+0.4
4,789,011	-		Psyr_4021	0.35	+0.2
4,789,011	-		Psyr_4021	0.35	+1.6
4,789,011	-		Psyr_4021	0.35	+0.9
4,789,011	-		Psyr_4021	0.35	+0.5
4,789,011	-		Psyr_4021	0.35	+0.4
4,789,011	-		Psyr_4021	0.35	-1.3
4,789,011	-		Psyr_4021	0.35	+0.6
4,789,180	+		Psyr_4021	0.58	+0.3
4,789,180	+		Psyr_4021	0.58	-0.8
4,789,180	+		Psyr_4021	0.58	-0.1
4,789,180	+		Psyr_4021	0.58	+0.3
4,789,180	+		Psyr_4021	0.58	-0.1
4,789,180	+		Psyr_4021	0.58	-1.5
4,789,181	-		Psyr_4021	0.58	+1.1
4,789,181	-		Psyr_4021	0.58	+1.3
4,789,181	-		Psyr_4021	0.58	-1.8
4,789,181	-		Psyr_4021	0.58	-1.6
4,789,181	-		Psyr_4021	0.58	-0.1
4,789,181	-		Psyr_4021	0.58	-0.3
4,789,181	-		Psyr_4021	0.58	+1.1
4,789,245	-		Psyr_4021	0.67	-0.5
4,789,447	-				-0.1
4,789,447	-				+0.4
4,789,447	-				+0.2
4,789,447	-				+0.1
4,789,477	+				-0.1
4,789,477	+				+0.1
4,789,478	-				-0.5