Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2247 and Psyr_2248 are separated by 44 nucleotides Psyr_2248 and Psyr_2249 are separated by 28 nucleotides Psyr_2249 and Psyr_2250 are separated by 36 nucleotides
Psyr_2247: Psyr_2247 - ABC transporter, at 2,613,559 to 2,614,392
_2247
Psyr_2248: Psyr_2248 - Phosphonate-binding periplasmic protein, at 2,614,437 to 2,615,447
_2248
Psyr_2249: Psyr_2249 - Binding-protein-dependent transport systems inner membrane component, at 2,615,476 to 2,616,264
_2249
Psyr_2250: Psyr_2250 - transcriptional regulator, GntR family, at 2,616,301 to 2,617,020
_2250
Position (kb)
2614
2615
2616 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2613.455 kb on - strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.579 kb on - strand at 2613.579 kb on - strand at 2613.636 kb on + strand at 2613.638 kb on + strand at 2613.638 kb on + strand at 2613.638 kb on + strand at 2613.827 kb on - strand, within Psyr_2247 at 2613.828 kb on + strand, within Psyr_2247 at 2613.828 kb on + strand, within Psyr_2247 at 2613.829 kb on - strand, within Psyr_2247 at 2613.829 kb on - strand, within Psyr_2247 at 2613.829 kb on - strand, within Psyr_2247 at 2614.899 kb on + strand, within Psyr_2248 at 2614.899 kb on + strand, within Psyr_2248 at 2614.900 kb on - strand, within Psyr_2248 at 2614.914 kb on + strand, within Psyr_2248 at 2614.917 kb on + strand, within Psyr_2248 at 2614.917 kb on + strand, within Psyr_2248 at 2614.918 kb on - strand, within Psyr_2248 at 2614.918 kb on - strand, within Psyr_2248 at 2614.918 kb on - strand, within Psyr_2248 at 2615.194 kb on - strand, within Psyr_2248 at 2615.402 kb on + strand at 2615.402 kb on + strand at 2615.494 kb on + strand at 2615.494 kb on + strand at 2615.495 kb on - strand at 2616.026 kb on - strand, within Psyr_2249 at 2616.064 kb on + strand, within Psyr_2249 at 2616.065 kb on - strand, within Psyr_2249 at 2616.065 kb on - strand, within Psyr_2249 at 2616.065 kb on - strand, within Psyr_2249 at 2616.071 kb on + strand, within Psyr_2249 at 2616.215 kb on + strand at 2616.331 kb on + strand at 2616.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 2,613,455 - -0.3 2,613,578 + +1.2 2,613,578 + -0.8 2,613,578 + -0.1 2,613,578 + +0.2 2,613,578 + +0.5 2,613,579 - -0.1 2,613,579 - +0.9 2,613,636 + +2.1 2,613,638 + +0.8 2,613,638 + -0.5 2,613,638 + -1.0 2,613,827 - Psyr_2247 0.32 +0.5 2,613,828 + Psyr_2247 0.32 -2.5 2,613,828 + Psyr_2247 0.32 -0.9 2,613,829 - Psyr_2247 0.32 +0.2 2,613,829 - Psyr_2247 0.32 +0.3 2,613,829 - Psyr_2247 0.32 -0.5 2,614,899 + Psyr_2248 0.46 -1.3 2,614,899 + Psyr_2248 0.46 -1.6 2,614,900 - Psyr_2248 0.46 -0.5 2,614,914 + Psyr_2248 0.47 -0.8 2,614,917 + Psyr_2248 0.47 -1.2 2,614,917 + Psyr_2248 0.47 -0.7 2,614,918 - Psyr_2248 0.48 -0.8 2,614,918 - Psyr_2248 0.48 -0.1 2,614,918 - Psyr_2248 0.48 -1.8 2,615,194 - Psyr_2248 0.75 -0.5 2,615,402 + +1.5 2,615,402 + -0.3 2,615,494 + +0.5 2,615,494 + +1.3 2,615,495 - +0.5 2,616,026 - Psyr_2249 0.70 +0.1 2,616,064 + Psyr_2249 0.75 +0.1 2,616,065 - Psyr_2249 0.75 -0.1 2,616,065 - Psyr_2249 0.75 -0.2 2,616,065 - Psyr_2249 0.75 -0.2 2,616,071 + Psyr_2249 0.75 -0.1 2,616,215 + -0.8 2,616,331 + -2.0 2,616,332 - +0.5
Or see this region's nucleotide sequence