Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1485

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
1,672,307	-				-0.1
1,672,336	+				+0.1
1,672,336	+				+2.2
1,672,337	-				-1.7
1,672,357	+				+0.3
1,672,358	-				+0.7
1,672,358	-				-0.3
1,672,393	+				+1.5
1,672,418	+				-1.9
1,672,419	-				-0.2
1,672,419	-				+0.3
1,672,419	-				+0.7
1,672,419	-				-0.1
1,672,459	+				+0.9
1,672,503	+				+0.9
1,672,628	+		Psyr_1483	0.18	+0.9
1,672,629	-		Psyr_1483	0.18	-1.1
1,672,660	+		Psyr_1483	0.30	+2.8
1,672,661	-		Psyr_1483	0.30	+2.5
1,672,661	-		Psyr_1483	0.30	+2.1
1,672,674	-		Psyr_1483	0.35	+0.3
1,672,701	+		Psyr_1483	0.45	-0.8
1,672,702	-		Psyr_1483	0.46	-1.1
1,672,702	-		Psyr_1483	0.46	-0.7
1,672,773	-		Psyr_1483	0.72	-1.0
1,672,826	+				-2.3
1,672,826	+				+1.4
1,672,826	+				+0.6
1,672,826	+				+0.2
1,672,826	+				+0.7
1,672,826	+				-1.1
1,672,827	-				-0.7
1,672,827	-				+0.4
1,672,827	-				-0.1
1,672,827	-				+0.9
1,672,827	-				+0.6
1,672,832	-				-0.7
1,672,833	+				-0.4
1,672,834	-				+0.5
1,672,842	+				+0.5
1,672,843	-				-1.3
1,672,918	-				+0.9
1,672,938	+		Psyr_1484	0.15	+1.1
1,672,938	+		Psyr_1484	0.15	-0.7
1,672,938	+		Psyr_1484	0.15	+0.0
1,672,938	+		Psyr_1484	0.15	+1.2
1,672,938	+		Psyr_1484	0.15	+0.5
1,672,938	+		Psyr_1484	0.15	+1.1
1,672,938	+		Psyr_1484	0.15	+0.5
1,672,938	+		Psyr_1484	0.15	-1.4
1,672,938	+		Psyr_1484	0.15	-1.4
1,672,938	+		Psyr_1484	0.15	+1.2
1,672,939	-		Psyr_1484	0.15	+0.9
1,672,939	-		Psyr_1484	0.15	+0.7
1,672,939	-		Psyr_1484	0.15	-0.1
1,672,939	-		Psyr_1484	0.15	+1.4
1,672,939	-		Psyr_1484	0.15	-0.2
1,672,939	-		Psyr_1484	0.15	+0.3
1,672,939	-		Psyr_1484	0.15	-0.2
1,672,939	-		Psyr_1484	0.15	+1.4
1,672,939	-		Psyr_1484	0.15	-0.9
1,672,939	-		Psyr_1484	0.15	-1.9
1,673,007	-		Psyr_1484	0.36	-0.4
1,673,008	+		Psyr_1484	0.37	-1.9
1,673,008	+		Psyr_1484	0.37	+0.2
1,673,008	+		Psyr_1484	0.37	+1.1
1,673,008	+		Psyr_1484	0.37	-0.1
1,673,008	+		Psyr_1484	0.37	+0.1
1,673,008	+		Psyr_1484	0.37	+1.4
1,673,008	+		Psyr_1484	0.37	-0.7
1,673,009	-		Psyr_1484	0.37	+2.1
1,673,009	-		Psyr_1484	0.37	-0.3
1,673,009	-		Psyr_1484	0.37	-0.9
1,673,009	-		Psyr_1484	0.37	+0.8
1,673,075	+		Psyr_1484	0.57	+0.6
1,673,076	-		Psyr_1484	0.58	-0.4
1,673,174	-		Psyr_1484	0.88	-0.3
1,673,174	-		Psyr_1484	0.88	+0.7
1,673,212	+				-0.7
1,673,212	+				-0.1
1,673,212	+				-0.1
1,673,212	+				+0.6
1,673,212	+				+0.2
1,673,212	+				+0.1
1,673,212	+				+0.2
1,673,213	-				-0.1
1,673,213	-				-0.1
1,673,213	-				+0.9
1,673,213	-				-1.1
1,673,213	-				+0.9
1,673,213	-				-0.3
1,673,213	-				-0.7
1,673,216	+				+0.5
1,673,216	+				+0.4
1,673,216	+				-0.3
1,673,216	+				+0.1
1,673,216	+				+0.5
1,673,216	+				-3.3
1,673,216	+				-0.4
1,673,217	-				-0.1
1,673,217	-				-0.1
1,673,217	-				+1.6
1,673,217	-				+1.2
1,673,217	-				+0.5
1,673,217	-				-1.1
1,673,217	-				-0.4
1,673,217	-				+1.9
1,673,217	-				+0.3
1,673,217	-				+0.3
1,673,217	-				-1.1
1,673,217	-				-1.1
1,673,217	-				-0.3
1,673,217	-				-1.7
1,673,217	-				-1.9
1,673,217	-				+0.8
1,673,217	-				+0.3
1,673,217	-				+0.2
1,673,217	-				+1.1
1,673,217	-				+0.9
1,673,225	+				-0.7
1,673,226	-				-2.8
1,673,259	+				-0.1
1,673,259	+				-1.4
1,673,260	-				-0.1
1,673,294	+				-0.1
1,673,294	+				-1.4
1,673,295	-				-0.7
1,673,295	-				+0.2
1,673,323	+				+0.4
1,673,323	+				+0.1
1,673,323	+				+1.2
1,673,323	+				-1.0
1,673,323	+				-2.1
1,673,323	+				-0.7
1,673,323	+				+1.1
1,673,323	+				+0.9
1,673,324	-				+1.2
1,673,324	-				-1.9
1,673,324	-				-1.1
1,673,324	-				+2.0
1,673,324	-				+0.7
1,673,324	-				+0.1
1,673,324	-				-0.1
1,673,375	+		Psyr_1485	0.22	-1.7
1,673,375	+		Psyr_1485	0.22	-2.5
1,673,375	+		Psyr_1485	0.22	+0.9
1,673,397	+		Psyr_1485	0.28	-0.1
1,673,397	+		Psyr_1485	0.28	+0.0
1,673,398	-		Psyr_1485	0.29	-0.7
1,673,398	-		Psyr_1485	0.29	-0.1
1,673,398	-		Psyr_1485	0.29	-0.5
1,673,398	-		Psyr_1485	0.29	+0.9
1,673,398	-		Psyr_1485	0.29	-1.3
1,673,401	+		Psyr_1485	0.30	-2.2
1,673,401	+		Psyr_1485	0.30	+2.9
1,673,401	+		Psyr_1485	0.30	+0.9
1,673,401	+		Psyr_1485	0.30	+0.7
1,673,401	+		Psyr_1485	0.30	+0.2
1,673,401	+		Psyr_1485	0.30	+0.6
1,673,402	-		Psyr_1485	0.30	+0.3
1,673,402	-		Psyr_1485	0.30	+1.5
1,673,402	-		Psyr_1485	0.30	+5.8
1,673,402	-		Psyr_1485	0.30	-3.3
1,673,402	-		Psyr_1485	0.30	+0.0
1,673,477	+		Psyr_1485	0.50	+0.3
1,673,477	+		Psyr_1485	0.50	+0.3
1,673,535	+		Psyr_1485	0.66	+0.6
1,673,566	+		Psyr_1485	0.75	-0.3
1,673,566	+		Psyr_1485	0.75	-1.1
1,673,566	+		Psyr_1485	0.75	+0.9
1,673,566	+		Psyr_1485	0.75	+0.8
1,673,566	+		Psyr_1485	0.75	+0.3
1,673,566	+		Psyr_1485	0.75	+0.7
1,673,567	-		Psyr_1485	0.75	+1.3
1,673,567	-		Psyr_1485	0.75	+0.7
1,673,567	-		Psyr_1485	0.75	-0.3
1,673,567	-		Psyr_1485	0.75	+2.5
1,673,567	-		Psyr_1485	0.75	+0.6
1,673,567	-		Psyr_1485	0.75	-0.5
1,673,615	+		Psyr_1485	0.88	+0.3
1,673,616	-		Psyr_1485	0.88	-0.3
1,673,726	+				+1.4
1,673,726	+				-1.5
1,673,794	+		Psyr_1486	0.10	+0.1
1,673,794	+		Psyr_1486	0.10	-0.6
1,673,795	-		Psyr_1486	0.10	+0.1
1,673,795	-		Psyr_1486	0.10	-1.3
1,673,795	-		Psyr_1486	0.10	-0.7
1,673,795	-		Psyr_1486	0.10	-1.7
1,673,821	+		Psyr_1486	0.12	+0.5
1,673,906	+		Psyr_1486	0.19	+0.1
1,673,906	+		Psyr_1486	0.19	+0.9
1,673,907	-		Psyr_1486	0.19	-1.5
1,673,909	+		Psyr_1486	0.19	+0.2
1,673,909	+		Psyr_1486	0.19	-0.4
1,673,909	+		Psyr_1486	0.19	+0.9
1,673,909	+		Psyr_1486	0.19	+0.0
1,673,909	+		Psyr_1486	0.19	+1.5
1,673,910	-		Psyr_1486	0.19	+0.3
1,674,010	+		Psyr_1486	0.26	+0.7
1,674,010	+		Psyr_1486	0.26	+0.9
1,674,011	-		Psyr_1486	0.26	-0.4
1,674,011	-		Psyr_1486	0.26	+0.9
1,674,011	-		Psyr_1486	0.26	-0.3
1,674,011	-		Psyr_1486	0.26	-0.3
1,674,011	-		Psyr_1486	0.26	-0.1
1,674,011	-		Psyr_1486	0.26	-0.3
1,674,148	+		Psyr_1486	0.37	-0.4
1,674,148	+		Psyr_1486	0.37	-1.1
1,674,148	+		Psyr_1486	0.37	+0.6
1,674,148	+		Psyr_1486	0.37	+0.8
1,674,148	+		Psyr_1486	0.37	+0.9
1,674,148	+		Psyr_1486	0.37	+0.6
1,674,148	+		Psyr_1486	0.37	-0.8
1,674,148	+		Psyr_1486	0.37	-0.5
1,674,148	+		Psyr_1486	0.37	-1.7
1,674,148	+		Psyr_1486	0.37	-0.5
1,674,148	+		Psyr_1486	0.37	-0.1
1,674,148	+		Psyr_1486	0.37	-0.1
1,674,148	+		Psyr_1486	0.37	+0.7
1,674,148	+		Psyr_1486	0.37	+0.4
1,674,148	+		Psyr_1486	0.37	+0.5
1,674,148	+		Psyr_1486	0.37	+0.3
1,674,149	-		Psyr_1486	0.37	+0.9
1,674,149	-		Psyr_1486	0.37	-0.7
1,674,149	-		Psyr_1486	0.37	-0.5
1,674,149	-		Psyr_1486	0.37	-0.4
1,674,149	-		Psyr_1486	0.37	+0.8
1,674,149	-		Psyr_1486	0.37	+1.2
1,674,149	-		Psyr_1486	0.37	+1.5
1,674,152	+		Psyr_1486	0.37	-0.7
1,674,152	+		Psyr_1486	0.37	+0.2
1,674,152	+		Psyr_1486	0.37	-2.2
1,674,152	+		Psyr_1486	0.37	-0.1
1,674,152	+		Psyr_1486	0.37	+0.1
1,674,152	+		Psyr_1486	0.37	-0.5
1,674,153	-		Psyr_1486	0.37	-1.0
1,674,166	+		Psyr_1486	0.38	-0.3
1,674,166	+		Psyr_1486	0.38	-0.3
1,674,166	+		Psyr_1486	0.38	+3.8
1,674,166	+		Psyr_1486	0.38	+0.7
1,674,166	+		Psyr_1486	0.38	-0.1
1,674,166	+		Psyr_1486	0.38	-0.2
1,674,166	+		Psyr_1486	0.38	-0.7
1,674,166	+		Psyr_1486	0.38	+1.3
1,674,166	+		Psyr_1486	0.38	-0.1
1,674,167	-		Psyr_1486	0.38	+0.8
1,674,167	-		Psyr_1486	0.38	-1.7
1,674,167	-		Psyr_1486	0.38	-0.1
1,674,174	-		Psyr_1486	0.39	-1.9
1,674,174	-		Psyr_1486	0.39	-0.3
1,674,176	+		Psyr_1486	0.39	-2.4
1,674,229	-		Psyr_1486	0.43	+0.9
1,674,238	+		Psyr_1486	0.43	+0.1
1,674,238	+		Psyr_1486	0.43	-0.1
1,674,238	+		Psyr_1486	0.43	+0.2
1,674,238	+		Psyr_1486	0.43	-1.2
1,674,238	+		Psyr_1486	0.43	+0.8
1,674,239	-		Psyr_1486	0.43	-2.4
1,674,239	-		Psyr_1486	0.43	-0.2
1,674,239	-		Psyr_1486	0.43	-1.3
1,674,239	-		Psyr_1486	0.43	+0.6
1,674,239	-		Psyr_1486	0.43	-0.4
1,674,291	+		Psyr_1486	0.47	+0.6
1,674,292	-		Psyr_1486	0.47	+1.3
1,674,379	+		Psyr_1486	0.54	+1.7
1,674,379	+		Psyr_1486	0.54	+0.2
1,674,379	+		Psyr_1486	0.54	-1.5
1,674,379	+		Psyr_1486	0.54	+0.5
1,674,379	+		Psyr_1486	0.54	-1.5
1,674,379	+		Psyr_1486	0.54	+1.0
1,674,379	+		Psyr_1486	0.54	-0.1
1,674,379	+		Psyr_1486	0.54	+0.3
1,674,379	+		Psyr_1486	0.54	+0.9
1,674,380	-		Psyr_1486	0.54	-1.3
1,674,380	-		Psyr_1486	0.54	-1.9
1,674,380	-		Psyr_1486	0.54	-0.5
1,674,380	-		Psyr_1486	0.54	+0.8
1,674,380	-		Psyr_1486	0.54	+0.9
1,674,380	-		Psyr_1486	0.54	+0.3
1,674,460	+		Psyr_1486	0.60	+0.1
1,674,467	+		Psyr_1486	0.60	+0.2
1,674,467	+		Psyr_1486	0.60	+0.2
1,674,468	-		Psyr_1486	0.60	+0.1
1,674,468	-		Psyr_1486	0.60	-0.2
1,674,468	-		Psyr_1486	0.60	+0.1
1,674,468	-		Psyr_1486	0.60	-1.7
1,674,468	-		Psyr_1486	0.60	-0.1
1,674,468	-		Psyr_1486	0.60	+0.9
1,674,468	-		Psyr_1486	0.60	-0.6
1,674,468	-		Psyr_1486	0.60	-0.8
1,674,468	-		Psyr_1486	0.60	-1.3
1,674,468	-		Psyr_1486	0.60	-0.3
1,674,483	+		Psyr_1486	0.61	+0.3
1,674,483	+		Psyr_1486	0.61	-0.1
1,674,483	+		Psyr_1486	0.61	+0.1
1,674,483	+		Psyr_1486	0.61	-2.1
1,674,483	+		Psyr_1486	0.61	-1.0
1,674,484	-		Psyr_1486	0.62	-1.1
1,674,484	-		Psyr_1486	0.62	+0.4
1,674,484	-		Psyr_1486	0.62	-0.5
1,674,499	-		Psyr_1486	0.63	+0.7