Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0697 and Psyr_0698 are separated by 33 nucleotides Psyr_0698 and Psyr_0699 are separated by 6 nucleotides Psyr_0699 and Psyr_0700 are separated by 146 nucleotides Psyr_0700 and Psyr_0701 are separated by 240 nucleotides Psyr_0701 and Psyr_0702 are separated by 32 nucleotides
Psyr_0697: Psyr_0697 - tRNA 2-selenouridine synthase, at 801,532 to 802,632
_0697
Psyr_0698: Psyr_0698 - CDS, at 802,666 to 802,965
_0698
Psyr_0699: Psyr_0699 - CDS, at 802,972 to 803,430
_0699
Psyr_0700: Psyr_0700 - Trans-hexaprenyltranstransferase, at 803,577 to 804,545
_0700
Psyr_0701: Psyr_0701 - LSU ribosomal protein L21P, at 804,786 to 805,097
_0701
Psyr_0702: Psyr_0702 - LSU ribosomal protein L27P, at 805,130 to 805,405
_0702
Position (kb) 803
804
805 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 802.603 kb on + strand at 802.630 kb on + strand at 802.630 kb on + strand at 802.687 kb on + strand at 802.688 kb on - strand at 802.688 kb on - strand at 802.963 kb on + strand at 802.963 kb on + strand at 802.963 kb on + strand at 802.963 kb on + strand at 802.964 kb on - strand at 802.964 kb on - strand at 803.158 kb on + strand, within Psyr_0699 at 803.158 kb on + strand, within Psyr_0699 at 803.158 kb on + strand, within Psyr_0699 at 803.159 kb on - strand, within Psyr_0699 at 803.159 kb on - strand, within Psyr_0699 at 803.421 kb on - strand at 803.421 kb on - strand at 803.421 kb on - strand at 803.518 kb on - strand at 803.518 kb on - strand at 804.583 kb on - strand at 804.583 kb on - strand at 804.583 kb on - strand at 804.583 kb on - strand at 804.609 kb on + strand at 804.610 kb on - strand at 804.610 kb on - strand at 804.688 kb on + strand at 805.455 kb on + strand at 805.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 802,603 + +0.6 802,630 + +0.6 802,630 + +0.2 802,687 + -0.7 802,688 - +1.1 802,688 - -1.6 802,963 + +0.0 802,963 + -0.4 802,963 + +1.2 802,963 + +3.3 802,964 - -0.6 802,964 - -0.4 803,158 + Psyr_0699 0.41 -0.0 803,158 + Psyr_0699 0.41 -0.8 803,158 + Psyr_0699 0.41 +0.2 803,159 - Psyr_0699 0.41 +1.2 803,159 - Psyr_0699 0.41 +5.9 803,421 - -0.8 803,421 - -0.7 803,421 - -0.7 803,518 - +0.6 803,518 - -1.4 804,583 - -0.6 804,583 - -0.1 804,583 - +0.2 804,583 - -0.4 804,609 + +0.1 804,610 - -0.6 804,610 - -0.4 804,688 + -0.4 805,455 + -0.8 805,461 + +0.8
Or see this region's nucleotide sequence