Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0697

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0696 and Psyr_0697 overlap by 1 nucleotidesPsyr_0697 and Psyr_0698 are separated by 33 nucleotidesPsyr_0698 and Psyr_0699 are separated by 6 nucleotidesPsyr_0699 and Psyr_0700 are separated by 146 nucleotides Psyr_0696: Psyr_0696 - selenophosphate synthase, at 800,498 to 801,532 _0696 Psyr_0697: Psyr_0697 - tRNA 2-selenouridine synthase, at 801,532 to 802,632 _0697 Psyr_0698: Psyr_0698 - CDS, at 802,666 to 802,965 _0698 Psyr_0699: Psyr_0699 - CDS, at 802,972 to 803,430 _0699 Psyr_0700: Psyr_0700 - Trans-hexaprenyltranstransferase, at 803,577 to 804,545 _0700 Position (kb) 801 802 803Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 800.657 kb on + strand, within Psyr_0696at 800.658 kb on - strand, within Psyr_0696at 800.658 kb on - strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.771 kb on + strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 800.772 kb on - strand, within Psyr_0696at 801.017 kb on + strand, within Psyr_0696at 801.017 kb on + strand, within Psyr_0696at 801.018 kb on - strand, within Psyr_0696at 801.018 kb on - strand, within Psyr_0696at 801.018 kb on - strand, within Psyr_0696at 801.116 kb on - strand, within Psyr_0696at 801.116 kb on - strand, within Psyr_0696at 801.248 kb on + strand, within Psyr_0696at 801.248 kb on + strand, within Psyr_0696at 801.249 kb on - strand, within Psyr_0696at 801.249 kb on - strand, within Psyr_0696at 801.249 kb on - strand, within Psyr_0696at 801.249 kb on - strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strandat 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.284 kb on + strand, within Psyr_0696at 801.285 kb on - strand, within Psyr_0696at 801.285 kb on - strand, within Psyr_0696at 801.285 kb on - strand, within Psyr_0696at 801.285 kb on - strand, within Psyr_0696at 801.285 kb on - strand, within Psyr_0696at 801.285 kb on - strand, within Psyr_0696at 801.285 kb on - strand, within Psyr_0696at 801.336 kb on - strand, within Psyr_0696at 801.688 kb on + strand, within Psyr_0697at 801.688 kb on + strand, within Psyr_0697at 801.689 kb on - strand, within Psyr_0697at 801.689 kb on - strand, within Psyr_0697at 801.689 kb on - strand, within Psyr_0697at 801.805 kb on + strand, within Psyr_0697at 801.806 kb on - strand, within Psyr_0697at 801.899 kb on - strand, within Psyr_0697at 801.899 kb on - strand, within Psyr_0697at 802.001 kb on + strand, within Psyr_0697at 802.001 kb on + strand, within Psyr_0697at 802.001 kb on + strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.002 kb on - strand, within Psyr_0697at 802.294 kb on + strand, within Psyr_0697at 802.294 kb on + strand, within Psyr_0697at 802.294 kb on + strand, within Psyr_0697at 802.295 kb on - strand, within Psyr_0697at 802.295 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.390 kb on - strand, within Psyr_0697at 802.467 kb on + strand, within Psyr_0697at 802.519 kb on + strand, within Psyr_0697at 802.523 kb on - strandat 802.523 kb on - strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.534 kb on + strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.535 kb on - strandat 802.541 kb on - strandat 802.603 kb on + strandat 802.630 kb on + strandat 802.630 kb on + strandat 802.687 kb on + strandat 802.688 kb on - strandat 802.688 kb on - strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.964 kb on - strandat 802.964 kb on - strandat 803.158 kb on + strand, within Psyr_0699at 803.158 kb on + strand, within Psyr_0699at 803.158 kb on + strand, within Psyr_0699at 803.159 kb on - strand, within Psyr_0699at 803.159 kb on - strand, within Psyr_0699at 803.421 kb on - strandat 803.421 kb on - strandat 803.421 kb on - strandat 803.518 kb on - strandat 803.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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800,657 + Psyr_0696 0.15 -1.8
800,658 - Psyr_0696 0.15 +0.2
800,658 - Psyr_0696 0.15 -1.1
800,771 + Psyr_0696 0.26 -0.5
800,771 + Psyr_0696 0.26 -0.1
800,771 + Psyr_0696 0.26 +1.5
800,771 + Psyr_0696 0.26 +0.6
800,771 + Psyr_0696 0.26 -0.6
800,771 + Psyr_0696 0.26 +0.1
800,771 + Psyr_0696 0.26 -1.3
800,771 + Psyr_0696 0.26 +0.9
800,771 + Psyr_0696 0.26 -1.9
800,771 + Psyr_0696 0.26 -0.6
800,771 + Psyr_0696 0.26 -0.3
800,771 + Psyr_0696 0.26 -1.4
800,771 + Psyr_0696 0.26 -0.4
800,771 + Psyr_0696 0.26 -1.6
800,771 + Psyr_0696 0.26 +0.0
800,771 + Psyr_0696 0.26 +0.2
800,771 + Psyr_0696 0.26 -1.1
800,771 + Psyr_0696 0.26 +0.0
800,772 - Psyr_0696 0.26 +0.7
800,772 - Psyr_0696 0.26 +1.2
800,772 - Psyr_0696 0.26 +0.2
800,772 - Psyr_0696 0.26 +0.7
800,772 - Psyr_0696 0.26 +5.4
800,772 - Psyr_0696 0.26 -0.6
800,772 - Psyr_0696 0.26 +0.0
800,772 - Psyr_0696 0.26 +0.0
800,772 - Psyr_0696 0.26 -0.5
800,772 - Psyr_0696 0.26 -0.2
800,772 - Psyr_0696 0.26 +0.7
800,772 - Psyr_0696 0.26 -0.3
800,772 - Psyr_0696 0.26 -0.4
800,772 - Psyr_0696 0.26 -0.9
800,772 - Psyr_0696 0.26 +0.5
801,017 + Psyr_0696 0.50 -0.6
801,017 + Psyr_0696 0.50 +0.8
801,018 - Psyr_0696 0.50 +1.4
801,018 - Psyr_0696 0.50 -0.9
801,018 - Psyr_0696 0.50 -1.8
801,116 - Psyr_0696 0.60 -0.3
801,116 - Psyr_0696 0.60 +0.0
801,248 + Psyr_0696 0.72 +0.2
801,248 + Psyr_0696 0.72 +0.5
801,249 - Psyr_0696 0.73 +0.6
801,249 - Psyr_0696 0.73 +1.4
801,249 - Psyr_0696 0.73 -0.9
801,249 - Psyr_0696 0.73 +1.6
801,284 + Psyr_0696 0.76 +0.1
801,284 + +1.2
801,284 + Psyr_0696 0.76 -0.4
801,284 + Psyr_0696 0.76 -1.3
801,284 + Psyr_0696 0.76 +0.5
801,284 + Psyr_0696 0.76 -0.6
801,284 + Psyr_0696 0.76 -1.5
801,284 + Psyr_0696 0.76 -0.4
801,284 + Psyr_0696 0.76 +1.2
801,284 + Psyr_0696 0.76 -0.6
801,284 + Psyr_0696 0.76 +1.9
801,284 + Psyr_0696 0.76 +0.5
801,284 + Psyr_0696 0.76 -2.6
801,284 + Psyr_0696 0.76 +0.7
801,285 - Psyr_0696 0.76 +1.3
801,285 - Psyr_0696 0.76 +0.9
801,285 - Psyr_0696 0.76 -0.3
801,285 - Psyr_0696 0.76 +0.2
801,285 - Psyr_0696 0.76 -0.5
801,285 - Psyr_0696 0.76 -1.6
801,285 - Psyr_0696 0.76 -2.6
801,336 - Psyr_0696 0.81 +0.5
801,688 + Psyr_0697 0.14 +1.0
801,688 + Psyr_0697 0.14 +0.2
801,689 - Psyr_0697 0.14 +1.2
801,689 - Psyr_0697 0.14 +0.6
801,689 - Psyr_0697 0.14 -0.8
801,805 + Psyr_0697 0.25 -1.1
801,806 - Psyr_0697 0.25 +0.0
801,899 - Psyr_0697 0.33 +1.2
801,899 - Psyr_0697 0.33 +0.2
802,001 + Psyr_0697 0.43 -1.1
802,001 + Psyr_0697 0.43 -0.8
802,001 + Psyr_0697 0.43 +0.8
802,002 - Psyr_0697 0.43 -1.1
802,002 - Psyr_0697 0.43 -0.9
802,002 - Psyr_0697 0.43 +1.2
802,002 - Psyr_0697 0.43 -0.8
802,294 + Psyr_0697 0.69 +0.8
802,294 + Psyr_0697 0.69 -1.8
802,294 + Psyr_0697 0.69 +0.1
802,295 - Psyr_0697 0.69 +0.9
802,295 - Psyr_0697 0.69 -0.8
802,390 - Psyr_0697 0.78 +0.1
802,390 - Psyr_0697 0.78 +0.6
802,390 - Psyr_0697 0.78 -0.2
802,390 - Psyr_0697 0.78 +1.1
802,467 + Psyr_0697 0.85 +0.4
802,519 + Psyr_0697 0.90 +0.8
802,523 - -0.6
802,523 - +0.6
802,534 + +0.2
802,534 + -0.1
802,534 + +0.3
802,534 + -0.1
802,534 + -0.6
802,534 + -1.7
802,534 + +0.9
802,534 + -0.4
802,535 - -0.9
802,535 - +0.2
802,535 - -2.0
802,535 - +0.3
802,535 - +0.1
802,535 - -0.5
802,535 - +0.5
802,535 - +0.8
802,535 - +0.6
802,541 - -0.7
802,603 + +0.6
802,630 + +0.6
802,630 + +0.2
802,687 + -0.7
802,688 - +1.1
802,688 - -1.6
802,963 + +0.0
802,963 + -0.4
802,963 + +1.2
802,963 + +3.3
802,964 - -0.6
802,964 - -0.4
803,158 + Psyr_0699 0.41 -0.0
803,158 + Psyr_0699 0.41 -0.8
803,158 + Psyr_0699 0.41 +0.2
803,159 - Psyr_0699 0.41 +1.2
803,159 - Psyr_0699 0.41 +5.9
803,421 - -0.8
803,421 - -0.7
803,421 - -0.7
803,518 - +0.6
803,518 - -1.4

Or see this region's nucleotide sequence