Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0634 and Psyr_0635 are separated by 140 nucleotides Psyr_0635 and Psyr_0636 are separated by 203 nucleotides Psyr_0636 and Psyr_0637 overlap by 4 nucleotides Psyr_0637 and Psyr_0638 are separated by 14 nucleotides
Psyr_0634: Psyr_0634 - MORN motif protein, at 723,745 to 725,472
_0634
Psyr_0635: Psyr_0635 - MaoC-like dehydratase, at 725,613 to 726,068
_0635
Psyr_0636: Psyr_0636 - LrgA, at 726,272 to 726,634
_0636
Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347
_0637
Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952
_0638
Position (kb) 726
727 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 725.529 kb on - strand at 725.551 kb on + strand at 725.552 kb on - strand at 725.552 kb on - strand at 725.552 kb on - strand at 725.552 kb on - strand at 725.614 kb on + strand at 725.615 kb on - strand at 725.616 kb on + strand at 725.616 kb on + strand at 725.617 kb on - strand at 725.632 kb on - strand at 725.803 kb on + strand, within Psyr_0635 at 725.803 kb on + strand, within Psyr_0635 at 725.835 kb on + strand, within Psyr_0635 at 725.836 kb on - strand, within Psyr_0635 at 725.836 kb on - strand, within Psyr_0635 at 725.981 kb on + strand, within Psyr_0635 at 726.034 kb on + strand at 726.034 kb on + strand at 726.034 kb on + strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.069 kb on - strand at 726.069 kb on - strand at 726.069 kb on - strand at 726.095 kb on + strand at 726.095 kb on + strand at 726.096 kb on - strand at 726.096 kb on - strand at 726.096 kb on - strand at 726.096 kb on - strand at 726.223 kb on + strand at 726.223 kb on + strand at 726.223 kb on + strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.225 kb on + strand at 726.225 kb on + strand at 726.225 kb on + strand at 726.226 kb on - strand at 726.226 kb on - strand at 726.226 kb on - strand at 726.255 kb on + strand at 726.255 kb on + strand at 726.255 kb on + strand at 726.383 kb on - strand, within Psyr_0636 at 726.383 kb on - strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636 at 726.498 kb on - strand, within Psyr_0636 at 726.498 kb on - strand, within Psyr_0636 at 726.498 kb on - strand at 726.498 kb on - strand, within Psyr_0636 at 726.710 kb on - strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.895 kb on + strand, within Psyr_0637 at 726.896 kb on - strand, within Psyr_0637 at 726.903 kb on + strand, within Psyr_0637 at 726.903 kb on + strand, within Psyr_0637 at 727.131 kb on - strand, within Psyr_0637 at 727.345 kb on + strand at 727.346 kb on - strand at 727.362 kb on - strand at 727.496 kb on + strand, within Psyr_0638 at 727.497 kb on - strand, within Psyr_0638
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 725,529 - -0.2 725,551 + -0.2 725,552 - -0.5 725,552 - +0.0 725,552 - -0.3 725,552 - +1.2 725,614 + +0.7 725,615 - -0.2 725,616 + -0.3 725,616 + +0.9 725,617 - -0.2 725,632 - -2.1 725,803 + Psyr_0635 0.42 +2.8 725,803 + Psyr_0635 0.42 -0.3 725,835 + Psyr_0635 0.49 -0.5 725,836 - Psyr_0635 0.49 +0.3 725,836 - Psyr_0635 0.49 -0.3 725,981 + Psyr_0635 0.81 +0.5 726,034 + +0.3 726,034 + -0.1 726,034 + -0.3 726,035 - +0.3 726,035 - -0.3 726,035 - -0.3 726,035 - -0.4 726,035 - +0.5 726,068 + -1.0 726,068 + -0.3 726,068 + +0.5 726,068 + +0.8 726,068 + +0.2 726,069 - +0.5 726,069 - +0.3 726,069 - -0.3 726,095 + +0.3 726,095 + -1.5 726,096 - +0.3 726,096 - -0.2 726,096 - -0.4 726,096 - +0.4 726,223 + -1.1 726,223 + -0.5 726,223 + +0.3 726,224 - -0.9 726,224 - +0.0 726,224 - +0.4 726,224 - -0.5 726,224 - +0.2 726,224 - -0.6 726,225 + -1.9 726,225 + +1.0 726,225 + +0.3 726,226 - +0.7 726,226 - -0.6 726,226 - +0.2 726,255 + -1.3 726,255 + +0.8 726,255 + -0.4 726,383 - Psyr_0636 0.31 +1.0 726,383 - Psyr_0636 0.31 +1.0 726,389 + Psyr_0636 0.32 +2.7 726,389 + Psyr_0636 0.32 -0.7 726,389 + Psyr_0636 0.32 -0.9 726,389 + Psyr_0636 0.32 -0.0 726,389 + Psyr_0636 0.32 +0.3 726,389 + Psyr_0636 0.32 -0.2 726,390 - Psyr_0636 0.33 -0.0 726,390 - Psyr_0636 0.33 +0.3 726,498 - Psyr_0636 0.62 -0.4 726,498 - Psyr_0636 0.62 +0.8 726,498 - -0.3 726,498 - Psyr_0636 0.62 +3.8 726,710 - Psyr_0637 0.11 +0.5 726,817 + Psyr_0637 0.26 -0.9 726,817 + Psyr_0637 0.26 +0.0 726,817 + Psyr_0637 0.26 +1.1 726,817 + Psyr_0637 0.26 +0.3 726,817 + Psyr_0637 0.26 +0.7 726,895 + Psyr_0637 0.37 -0.2 726,896 - Psyr_0637 0.37 +0.4 726,903 + Psyr_0637 0.38 -0.3 726,903 + Psyr_0637 0.38 +0.2 727,131 - Psyr_0637 0.70 -0.3 727,345 + -0.2 727,346 - +1.3 727,362 - +1.1 727,496 + Psyr_0638 0.23 +0.2 727,497 - Psyr_0638 0.23 +1.1
Or see this region's nucleotide sequence