Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0277 and Psyr_0278 overlap by 8 nucleotides Psyr_0278 and Psyr_0279 are separated by 38 nucleotides Psyr_0279 and Psyr_0280 are separated by 152 nucleotides
Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788
_0277
Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569
_0278
Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324
_0279
Psyr_0280: Psyr_0280 - Catalase, at 297,477 to 299,627
_0280
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.776 kb on + strand at 295.776 kb on + strand at 295.776 kb on + strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.794 kb on + strand at 295.795 kb on - strand at 295.795 kb on - strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.877 kb on + strand, within Psyr_0278 at 295.877 kb on + strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.466 kb on + strand, within Psyr_0278 at 296.467 kb on - strand, within Psyr_0278 at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.509 kb on - strand at 296.509 kb on - strand at 296.568 kb on - strand at 296.593 kb on + strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.629 kb on + strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.851 kb on + strand, within Psyr_0279 at 296.852 kb on - strand, within Psyr_0279 at 296.852 kb on - strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.871 kb on - strand, within Psyr_0279 at 297.404 kb on + strand at 297.404 kb on + strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.407 kb on - strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.571 kb on - strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.662 kb on - strand at 298.008 kb on + strand, within Psyr_0280 at 298.008 kb on + strand, within Psyr_0280 at 298.009 kb on - strand, within Psyr_0280 at 298.009 kb on - strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.147 kb on + strand, within Psyr_0280 at 298.273 kb on + strand, within Psyr_0280
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 295,681 + Psyr_0277 0.86 -0.0 295,681 + Psyr_0277 0.86 +0.7 295,681 + Psyr_0277 0.86 +0.1 295,681 + Psyr_0277 0.86 +0.2 295,681 + Psyr_0277 0.86 -0.9 295,682 - Psyr_0277 0.86 -1.1 295,682 - Psyr_0277 0.86 +1.2 295,682 - Psyr_0277 0.86 +0.7 295,682 - Psyr_0277 0.86 +0.5 295,682 - Psyr_0277 0.86 -0.8 295,682 - Psyr_0277 0.86 -1.4 295,776 + -0.9 295,776 + +0.4 295,776 + +0.6 295,777 - +0.7 295,777 - -0.4 295,794 + +1.3 295,795 - -2.5 295,795 - -0.2 295,799 + -0.9 295,799 + -0.2 295,799 + -1.7 295,800 - -0.4 295,800 - +0.3 295,800 - +1.2 295,800 - -0.8 295,800 - -0.0 295,800 - -0.8 295,800 - -0.4 295,800 - +0.5 295,800 - -2.0 295,800 - -0.9 295,877 + Psyr_0278 0.12 +2.4 295,877 + Psyr_0278 0.12 -0.2 295,878 - Psyr_0278 0.12 -1.6 295,878 - Psyr_0278 0.12 +1.2 295,878 - Psyr_0278 0.12 -0.6 295,878 - Psyr_0278 0.12 +1.2 296,278 + Psyr_0278 0.63 -1.7 296,278 + Psyr_0278 0.63 +0.8 296,278 + Psyr_0278 0.63 +1.4 296,278 + Psyr_0278 0.63 +0.3 296,278 + Psyr_0278 0.63 -2.3 296,279 - Psyr_0278 0.63 -0.0 296,279 - Psyr_0278 0.63 -1.0 296,279 - Psyr_0278 0.63 -0.8 296,356 + Psyr_0278 0.73 -0.2 296,356 + Psyr_0278 0.73 +0.2 296,356 + Psyr_0278 0.73 -0.7 296,356 + Psyr_0278 0.73 -0.2 296,357 - Psyr_0278 0.73 +0.1 296,357 - Psyr_0278 0.73 -0.2 296,466 + Psyr_0278 0.87 +0.2 296,467 - Psyr_0278 0.87 -0.5 296,506 + +0.6 296,506 + -0.6 296,506 + -1.0 296,506 + +0.5 296,506 + -1.2 296,506 + -0.6 296,507 - +0.4 296,507 - -1.7 296,507 - +0.1 296,507 - +0.9 296,507 - -1.4 296,508 + +0.1 296,508 + +0.4 296,508 + +2.4 296,508 + -1.2 296,508 + -0.4 296,509 - +0.4 296,509 - -0.8 296,568 - +0.7 296,593 + -0.4 296,594 - +0.5 296,594 - -0.1 296,594 - +0.6 296,629 + +0.4 296,630 - -0.8 296,630 - +0.8 296,630 - -0.2 296,630 - +0.6 296,851 + Psyr_0279 0.34 +0.9 296,852 - Psyr_0279 0.34 +1.6 296,852 - Psyr_0279 0.34 +0.1 296,870 + Psyr_0279 0.37 -0.4 296,870 + Psyr_0279 0.37 -0.3 296,870 + Psyr_0279 0.37 +1.2 296,870 + Psyr_0279 0.37 +0.4 296,870 + Psyr_0279 0.37 -0.5 296,870 + Psyr_0279 0.37 +0.4 296,870 + Psyr_0279 0.37 -0.4 296,871 - Psyr_0279 0.37 +1.2 297,404 + +0.6 297,404 + -0.2 297,405 - +0.8 297,405 - -1.6 297,405 - -0.7 297,405 - -0.2 297,407 - +0.6 297,464 + -1.9 297,464 + -0.6 297,464 + +1.6 297,464 + +1.1 297,464 + -0.2 297,465 - -1.4 297,465 - +0.7 297,465 - -2.5 297,465 - +1.4 297,465 - +0.3 297,465 - -0.7 297,571 - +2.0 297,661 + -1.7 297,661 + +1.2 297,661 + +2.9 297,661 + +0.2 297,661 + +0.0 297,662 - -0.5 298,008 + Psyr_0280 0.25 +1.8 298,008 + Psyr_0280 0.25 -1.4 298,009 - Psyr_0280 0.25 +0.0 298,009 - Psyr_0280 0.25 -0.3 298,114 + Psyr_0280 0.30 -1.4 298,114 + Psyr_0280 0.30 +0.2 298,114 + Psyr_0280 0.30 -0.4 298,115 - Psyr_0280 0.30 +0.0 298,115 - Psyr_0280 0.30 -1.2 298,115 - Psyr_0280 0.30 +0.5 298,115 - Psyr_0280 0.30 +0.1 298,147 + Psyr_0280 0.31 +0.9 298,273 + Psyr_0280 0.37 -1.0
Or see this region's nucleotide sequence