Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0082 and Psyr_0083 are separated by 13 nucleotides Psyr_0083 and Psyr_0084 are separated by 94 nucleotides Psyr_0084 and Psyr_0085 are separated by 151 nucleotides Psyr_0085 and Psyr_0086 are separated by 200 nucleotides
Psyr_0082: Psyr_0082 - Binding-protein-dependent transport systems inner membrane component, at 88,464 to 89,336
_0082
Psyr_0083: Psyr_0083 - Binding-protein-dependent transport systems inner membrane component, at 89,350 to 90,171
_0083
Psyr_0084: Psyr_0084 - extracellular solute-binding protein, family 1, at 90,266 to 91,276
_0084
Psyr_0085: Psyr_0085 - conserved hypothetical protein, at 91,428 to 91,607
_0085
Psyr_0086: Psyr_0086 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 91,808 to 93,727
_0086
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 89.329 kb on + strand at 89.329 kb on + strand at 89.329 kb on + strand at 89.329 kb on + strand at 89.330 kb on - strand at 89.330 kb on - strand at 89.330 kb on - strand at 89.450 kb on + strand, within Psyr_0083 at 89.450 kb on + strand, within Psyr_0083 at 89.451 kb on - strand, within Psyr_0083 at 89.451 kb on - strand, within Psyr_0083 at 89.819 kb on + strand, within Psyr_0083 at 89.819 kb on + strand, within Psyr_0083 at 89.820 kb on - strand, within Psyr_0083 at 89.913 kb on - strand, within Psyr_0083 at 89.970 kb on - strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.085 kb on + strand, within Psyr_0083 at 90.085 kb on + strand, within Psyr_0083 at 90.088 kb on + strand, within Psyr_0083 at 90.088 kb on + strand, within Psyr_0083 at 90.089 kb on - strand at 90.107 kb on + strand at 90.107 kb on + strand at 90.107 kb on + strand at 90.108 kb on - strand at 90.108 kb on - strand at 90.108 kb on - strand at 90.108 kb on - strand at 90.119 kb on + strand at 90.119 kb on + strand at 90.159 kb on + strand at 90.160 kb on - strand at 90.171 kb on + strand at 90.171 kb on + strand at 90.172 kb on - strand at 90.172 kb on - strand at 90.172 kb on - strand at 90.172 kb on - strand at 90.267 kb on + strand at 90.279 kb on + strand at 90.279 kb on + strand at 90.279 kb on + strand at 90.390 kb on + strand, within Psyr_0084 at 90.391 kb on - strand, within Psyr_0084 at 90.424 kb on - strand, within Psyr_0084 at 90.463 kb on - strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.927 kb on + strand, within Psyr_0084 at 90.927 kb on + strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.153 kb on - strand, within Psyr_0084 at 91.161 kb on + strand, within Psyr_0084 at 91.161 kb on + strand, within Psyr_0084 at 91.162 kb on - strand, within Psyr_0084 at 91.162 kb on - strand, within Psyr_0084 at 91.183 kb on - strand at 91.183 kb on - strand at 91.183 kb on - strand at 91.183 kb on - strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.297 kb on - strand at 91.297 kb on - strand at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.590 kb on - strand at 91.590 kb on - strand at 91.590 kb on - strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.613 kb on + strand at 91.613 kb on + strand at 91.614 kb on - strand at 91.614 kb on - strand at 91.614 kb on - strand at 91.614 kb on - strand at 91.662 kb on + strand at 91.678 kb on + strand at 91.681 kb on + strand at 91.681 kb on + strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.902 kb on - strand at 91.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 89,329 + +0.7 89,329 + +0.1 89,329 + +0.6 89,329 + +1.1 89,330 - -0.8 89,330 - -0.4 89,330 - -0.0 89,450 + Psyr_0083 0.12 -1.5 89,450 + Psyr_0083 0.12 -0.8 89,451 - Psyr_0083 0.12 +1.9 89,451 - Psyr_0083 0.12 -0.5 89,819 + Psyr_0083 0.57 +1.1 89,819 + Psyr_0083 0.57 +0.0 89,820 - Psyr_0083 0.57 +2.0 89,913 - Psyr_0083 0.68 +0.7 89,970 - Psyr_0083 0.75 -0.1 90,064 + Psyr_0083 0.87 +0.2 90,064 + Psyr_0083 0.87 -0.9 90,064 + Psyr_0083 0.87 +1.5 90,064 + Psyr_0083 0.87 +0.4 90,064 + Psyr_0083 0.87 -0.5 90,064 + Psyr_0083 0.87 -1.0 90,064 + Psyr_0083 0.87 -0.6 90,064 + Psyr_0083 0.87 +1.0 90,064 + Psyr_0083 0.87 +0.3 90,064 + Psyr_0083 0.87 -0.3 90,065 - Psyr_0083 0.87 +1.7 90,065 - Psyr_0083 0.87 -0.1 90,065 - Psyr_0083 0.87 +0.5 90,065 - Psyr_0083 0.87 -0.2 90,065 - Psyr_0083 0.87 +0.1 90,065 - Psyr_0083 0.87 -0.6 90,065 - Psyr_0083 0.87 -0.1 90,085 + Psyr_0083 0.89 -2.1 90,085 + Psyr_0083 0.89 -2.3 90,088 + Psyr_0083 0.90 -0.4 90,088 + Psyr_0083 0.90 +0.0 90,089 - +0.5 90,107 + +0.9 90,107 + +1.5 90,107 + -1.7 90,108 - -2.1 90,108 - -0.6 90,108 - +0.0 90,108 - -1.4 90,119 + -0.5 90,119 + +0.5 90,159 + -0.9 90,160 - -0.1 90,171 + -2.4 90,171 + +3.0 90,172 - -0.9 90,172 - +0.8 90,172 - +0.7 90,172 - -0.2 90,267 + +0.3 90,279 + -0.1 90,279 + -0.0 90,279 + +0.1 90,390 + Psyr_0084 0.12 -0.2 90,391 - Psyr_0084 0.12 +0.8 90,424 - Psyr_0084 0.16 +0.4 90,463 - Psyr_0084 0.19 -1.5 90,728 + Psyr_0084 0.46 +0.0 90,728 + Psyr_0084 0.46 -1.1 90,728 + Psyr_0084 0.46 -0.4 90,728 + Psyr_0084 0.46 -0.5 90,728 + Psyr_0084 0.46 -0.1 90,729 - Psyr_0084 0.46 -0.1 90,729 - Psyr_0084 0.46 +0.4 90,729 - Psyr_0084 0.46 +1.1 90,729 - Psyr_0084 0.46 +0.5 90,729 - Psyr_0084 0.46 +0.1 90,729 - Psyr_0084 0.46 +0.9 90,729 - Psyr_0084 0.46 +0.2 90,729 - Psyr_0084 0.46 -0.1 90,729 - Psyr_0084 0.46 -1.7 90,732 + Psyr_0084 0.46 -0.1 90,732 + Psyr_0084 0.46 +1.5 90,732 + Psyr_0084 0.46 -0.7 90,732 + Psyr_0084 0.46 +0.1 90,732 + Psyr_0084 0.46 -0.3 90,733 - Psyr_0084 0.46 +0.5 90,733 - Psyr_0084 0.46 +0.5 90,733 - Psyr_0084 0.46 +0.0 90,733 - Psyr_0084 0.46 +1.5 90,733 - Psyr_0084 0.46 +0.5 90,733 - Psyr_0084 0.46 +0.2 90,927 + Psyr_0084 0.65 +0.5 90,927 + Psyr_0084 0.65 +1.5 90,928 - Psyr_0084 0.65 -1.9 90,928 - Psyr_0084 0.65 -1.3 90,928 - Psyr_0084 0.65 -1.7 90,928 - Psyr_0084 0.65 +0.2 90,928 - Psyr_0084 0.65 -1.7 90,928 - Psyr_0084 0.65 -0.2 91,152 + Psyr_0084 0.88 +0.2 91,152 + Psyr_0084 0.88 -2.9 91,152 + Psyr_0084 0.88 -2.7 91,152 + Psyr_0084 0.88 +0.7 91,152 + Psyr_0084 0.88 -1.2 91,152 + Psyr_0084 0.88 -0.8 91,153 - Psyr_0084 0.88 -2.2 91,161 + Psyr_0084 0.89 -1.7 91,161 + Psyr_0084 0.89 -0.4 91,162 - Psyr_0084 0.89 -0.7 91,162 - Psyr_0084 0.89 -0.5 91,183 - -0.5 91,183 - +0.2 91,183 - -0.4 91,183 - -0.2 91,276 + +0.1 91,276 + -0.2 91,276 + +0.0 91,276 + +0.3 91,276 + +0.1 91,276 + -1.5 91,276 + -1.2 91,276 + +1.5 91,276 + -0.1 91,276 + -0.1 91,276 + +3.0 91,276 + +0.1 91,276 + -1.3 91,277 - +0.7 91,277 - +1.0 91,277 - -0.3 91,277 - -1.1 91,277 - +0.3 91,277 - +0.5 91,277 - +1.5 91,277 - -0.0 91,277 - -1.0 91,277 - +0.5 91,277 - -0.3 91,277 - +0.7 91,296 + +0.1 91,296 + -0.4 91,296 + -0.4 91,296 + -0.7 91,296 + -0.9 91,297 - +0.2 91,297 - -1.0 91,589 + Psyr_0085 0.89 +0.8 91,589 + Psyr_0085 0.89 +0.1 91,589 + Psyr_0085 0.89 +0.7 91,589 + Psyr_0085 0.89 +0.0 91,589 + Psyr_0085 0.89 +1.5 91,589 + Psyr_0085 0.89 +2.1 91,589 + Psyr_0085 0.89 -0.1 91,589 + Psyr_0085 0.89 +1.5 91,589 + Psyr_0085 0.89 +0.5 91,589 + Psyr_0085 0.89 +0.2 91,590 - -0.3 91,590 - -0.3 91,590 - -0.1 91,593 + -0.5 91,593 + -0.1 91,593 + -0.5 91,593 + -0.8 91,593 + +0.1 91,593 + +2.9 91,594 - -0.2 91,594 - +1.5 91,594 - +0.1 91,594 - -0.2 91,594 - -1.1 91,613 + +0.0 91,613 + +0.5 91,614 - +0.8 91,614 - -0.1 91,614 - -0.7 91,614 - -0.1 91,662 + +0.5 91,678 + +0.3 91,681 + +0.5 91,681 + -0.5 91,682 - -0.4 91,682 - -1.0 91,682 - -0.3 91,682 - +0.5 91,682 - -1.0 91,682 - -0.9 91,682 - -0.4 91,682 - +0.7 91,809 + -0.5 91,809 + -0.2 91,809 + -0.1 91,809 + +1.0 91,809 + -0.0 91,809 + -0.1 91,809 + -0.1 91,810 - -1.5 91,810 - -0.3 91,810 - +0.5 91,810 - +0.0 91,810 - -0.4 91,810 - +0.7 91,902 - -0.5 91,902 - -1.2
Or see this region's nucleotide sequence