Experiment: 2-Deoxy-D-ribonic lithium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05834 and H281DRAFT_05835 are separated by 133 nucleotides H281DRAFT_05835 and H281DRAFT_05836 are separated by 67 nucleotides H281DRAFT_05836 and H281DRAFT_05837 are separated by 251 nucleotides
H281DRAFT_05834: H281DRAFT_05834 - hypothetical protein, at 109,596 to 110,402
_05834
H281DRAFT_05835: H281DRAFT_05835 - 3-hydroxyisobutyrate dehydrogenase, at 110,536 to 111,405
_05835
H281DRAFT_05836: H281DRAFT_05836 - Threonine/homoserine/homoserine lactone efflux protein, at 111,473 to 112,120
_05836
H281DRAFT_05837: H281DRAFT_05837 - outer membrane protein, at 112,372 to 113,196
_05837
Position (kb)
110
111
112 Strain fitness (log2 ratio)
-2
-1
0
1 at 109.538 kb on - strand at 109.538 kb on - strand at 109.538 kb on - strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.542 kb on - strand at 109.542 kb on - strand at 109.542 kb on - strand at 109.555 kb on - strand at 109.555 kb on - strand at 109.555 kb on - strand at 109.845 kb on + strand, within H281DRAFT_05834 at 109.845 kb on + strand, within H281DRAFT_05834 at 109.846 kb on - strand, within H281DRAFT_05834 at 109.930 kb on + strand, within H281DRAFT_05834 at 109.930 kb on + strand, within H281DRAFT_05834 at 109.931 kb on - strand, within H281DRAFT_05834 at 110.033 kb on - strand, within H281DRAFT_05834 at 110.044 kb on + strand, within H281DRAFT_05834 at 110.044 kb on + strand, within H281DRAFT_05834 at 110.051 kb on + strand, within H281DRAFT_05834 at 110.250 kb on + strand, within H281DRAFT_05834 at 110.250 kb on + strand, within H281DRAFT_05834 at 110.412 kb on - strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.504 kb on + strand at 110.505 kb on - strand at 110.518 kb on + strand at 110.519 kb on - strand at 110.519 kb on - strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.613 kb on - strand at 110.613 kb on - strand at 110.618 kb on + strand at 110.618 kb on + strand at 110.618 kb on + strand at 110.619 kb on - strand at 110.619 kb on - strand at 110.619 kb on - strand at 110.869 kb on + strand, within H281DRAFT_05835 at 110.870 kb on - strand, within H281DRAFT_05835 at 111.181 kb on + strand, within H281DRAFT_05835 at 111.181 kb on + strand, within H281DRAFT_05835 at 111.209 kb on - strand, within H281DRAFT_05835 at 111.445 kb on + strand at 111.445 kb on + strand at 111.445 kb on + strand at 111.445 kb on + strand at 111.446 kb on - strand at 111.446 kb on - strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.485 kb on - strand at 111.587 kb on - strand, within H281DRAFT_05836 at 111.725 kb on + strand, within H281DRAFT_05836 at 111.725 kb on + strand, within H281DRAFT_05836 at 111.726 kb on - strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.987 kb on - strand, within H281DRAFT_05836 at 112.108 kb on - strand at 112.218 kb on - strand at 112.219 kb on + strand at 112.220 kb on - strand at 112.220 kb on - strand at 112.274 kb on - strand at 112.312 kb on - strand at 112.380 kb on + strand at 112.381 kb on - strand at 112.381 kb on - strand at 112.382 kb on + strand at 112.382 kb on + strand at 112.382 kb on + strand at 112.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C) remove 109,538 - -0.6 109,538 - -0.1 109,538 - +0.2 109,541 + -0.6 109,541 + +0.6 109,541 + -0.1 109,541 + +0.5 109,541 + -0.8 109,541 + -0.0 109,542 - -0.6 109,542 - -0.0 109,542 - -0.0 109,555 - +0.4 109,555 - +0.3 109,555 - -0.2 109,845 + H281DRAFT_05834 0.31 -0.2 109,845 + H281DRAFT_05834 0.31 +0.3 109,846 - H281DRAFT_05834 0.31 +0.5 109,930 + H281DRAFT_05834 0.41 -1.8 109,930 + H281DRAFT_05834 0.41 -0.6 109,931 - H281DRAFT_05834 0.42 -0.7 110,033 - H281DRAFT_05834 0.54 -0.6 110,044 + H281DRAFT_05834 0.56 -0.2 110,044 + H281DRAFT_05834 0.56 +0.2 110,051 + H281DRAFT_05834 0.56 -0.9 110,250 + H281DRAFT_05834 0.81 +0.9 110,250 + H281DRAFT_05834 0.81 -1.3 110,412 - +0.5 110,484 + -0.5 110,484 + +0.3 110,484 + -0.8 110,484 + +0.1 110,484 + -0.2 110,484 + -0.7 110,484 + +0.1 110,484 + -0.4 110,484 + -0.2 110,484 + -1.5 110,484 + -0.5 110,485 - +0.6 110,485 - +0.2 110,485 - -0.4 110,485 - -0.2 110,485 - -0.6 110,485 - +0.1 110,485 - -0.8 110,485 - -0.4 110,485 - +0.2 110,485 - -2.2 110,485 - +0.2 110,485 - +0.1 110,485 - +1.3 110,485 - +0.1 110,504 + -1.3 110,505 - -0.0 110,518 + +0.3 110,519 - -0.6 110,519 - +0.4 110,612 + +1.3 110,612 + +1.1 110,612 + +0.1 110,612 + +0.1 110,612 + -0.5 110,613 - -0.7 110,613 - -0.3 110,618 + -0.1 110,618 + -0.1 110,618 + -0.4 110,619 - +0.0 110,619 - +0.4 110,619 - -0.5 110,869 + H281DRAFT_05835 0.38 +0.1 110,870 - H281DRAFT_05835 0.38 +0.1 111,181 + H281DRAFT_05835 0.74 +0.2 111,181 + H281DRAFT_05835 0.74 -1.2 111,209 - H281DRAFT_05835 0.77 -0.4 111,445 + +0.4 111,445 + +0.0 111,445 + +0.9 111,445 + +0.3 111,446 - +0.4 111,446 - +0.4 111,484 + -0.3 111,484 + -1.1 111,484 + -0.1 111,484 + -0.2 111,484 + +0.5 111,485 - +0.5 111,587 - H281DRAFT_05836 0.18 -1.5 111,725 + H281DRAFT_05836 0.39 +0.8 111,725 + H281DRAFT_05836 0.39 +0.9 111,726 - H281DRAFT_05836 0.39 -0.2 111,729 + H281DRAFT_05836 0.40 +0.4 111,729 + H281DRAFT_05836 0.40 +0.0 111,729 + H281DRAFT_05836 0.40 +1.7 111,729 + H281DRAFT_05836 0.40 +1.0 111,987 - H281DRAFT_05836 0.79 -0.4 112,108 - +0.3 112,218 - +0.3 112,219 + -0.0 112,220 - +0.7 112,220 - +0.1 112,274 - +0.7 112,312 - +0.8 112,380 + +0.4 112,381 - -0.0 112,381 - -0.0 112,382 + +0.0 112,382 + -0.8 112,382 + +0.3 112,383 - +0.3
Or see this region's nucleotide sequence