Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05675

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05673 and H281DRAFT_05674 are separated by 19 nucleotidesH281DRAFT_05674 and H281DRAFT_05675 are separated by 368 nucleotidesH281DRAFT_05675 and H281DRAFT_05676 are separated by 31 nucleotides H281DRAFT_05673: H281DRAFT_05673 - stringent starvation protein B, at 90,123 to 90,641 _05673 H281DRAFT_05674: H281DRAFT_05674 - tRNA_Thr_TGT, at 90,661 to 90,736 _05674 H281DRAFT_05675: H281DRAFT_05675 - Methylase of polypeptide chain release factors, at 91,105 to 92,232 _05675 H281DRAFT_05676: H281DRAFT_05676 - hypothetical protein, at 92,264 to 93,559 _05676 Position (kb) 91 92 93Strain fitness (log2 ratio) -1 0 1 2at 90.165 kb on + strandat 90.166 kb on - strandat 90.189 kb on + strand, within H281DRAFT_05673at 90.189 kb on + strand, within H281DRAFT_05673at 90.288 kb on - strand, within H281DRAFT_05673at 90.288 kb on - strand, within H281DRAFT_05673at 90.378 kb on - strand, within H281DRAFT_05673at 90.390 kb on + strand, within H281DRAFT_05673at 90.390 kb on + strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.614 kb on + strandat 90.634 kb on + strandat 90.634 kb on + strandat 90.645 kb on - strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.739 kb on - strandat 90.886 kb on + strandat 90.938 kb on + strandat 90.939 kb on - strandat 90.950 kb on + strandat 90.950 kb on + strandat 90.950 kb on + strandat 90.951 kb on - strandat 90.951 kb on - strandat 90.981 kb on - strandat 90.981 kb on - strandat 90.983 kb on + strandat 90.984 kb on - strandat 90.984 kb on - strandat 91.070 kb on + strandat 91.070 kb on + strandat 91.237 kb on + strand, within H281DRAFT_05675at 91.444 kb on + strand, within H281DRAFT_05675at 91.445 kb on - strand, within H281DRAFT_05675at 91.498 kb on + strand, within H281DRAFT_05675at 91.499 kb on - strand, within H281DRAFT_05675at 91.499 kb on - strand, within H281DRAFT_05675at 91.622 kb on - strand, within H281DRAFT_05675at 91.622 kb on - strand, within H281DRAFT_05675at 91.654 kb on + strand, within H281DRAFT_05675at 91.654 kb on + strand, within H281DRAFT_05675at 91.655 kb on - strand, within H281DRAFT_05675at 91.655 kb on - strandat 91.831 kb on + strand, within H281DRAFT_05675at 91.952 kb on - strand, within H281DRAFT_05675at 92.108 kb on + strand, within H281DRAFT_05675at 92.108 kb on + strand, within H281DRAFT_05675at 92.108 kb on + strand, within H281DRAFT_05675at 92.109 kb on - strand, within H281DRAFT_05675at 92.109 kb on - strand, within H281DRAFT_05675at 92.109 kb on - strand, within H281DRAFT_05675at 92.109 kb on - strand, within H281DRAFT_05675at 92.109 kb on - strand, within H281DRAFT_05675at 92.109 kb on - strand, within H281DRAFT_05675at 92.131 kb on - strandat 92.154 kb on + strandat 92.199 kb on + strandat 92.349 kb on + strandat 92.350 kb on - strandat 92.518 kb on + strand, within H281DRAFT_05676at 92.565 kb on - strand, within H281DRAFT_05676at 92.576 kb on + strand, within H281DRAFT_05676at 92.577 kb on - strandat 92.704 kb on + strand, within H281DRAFT_05676at 92.760 kb on + strandat 92.760 kb on + strand, within H281DRAFT_05676at 92.761 kb on - strand, within H281DRAFT_05676at 92.761 kb on - strand, within H281DRAFT_05676at 92.892 kb on + strand, within H281DRAFT_05676at 92.893 kb on - strand, within H281DRAFT_05676at 93.039 kb on + strand, within H281DRAFT_05676at 93.039 kb on + strand, within H281DRAFT_05676at 93.039 kb on + strand, within H281DRAFT_05676at 93.040 kb on - strandat 93.040 kb on - strand, within H281DRAFT_05676at 93.074 kb on + strand, within H281DRAFT_05676at 93.075 kb on - strand, within H281DRAFT_05676at 93.075 kb on - strand, within H281DRAFT_05676at 93.075 kb on - strand, within H281DRAFT_05676at 93.075 kb on - strand, within H281DRAFT_05676at 93.075 kb on - strand, within H281DRAFT_05676at 93.082 kb on + strand, within H281DRAFT_05676at 93.082 kb on + strand, within H281DRAFT_05676

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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90,165 + +0.5
90,166 - +0.4
90,189 + H281DRAFT_05673 0.13 +0.7
90,189 + H281DRAFT_05673 0.13 +1.5
90,288 - H281DRAFT_05673 0.32 +0.0
90,288 - H281DRAFT_05673 0.32 +0.3
90,378 - H281DRAFT_05673 0.49 +1.2
90,390 + H281DRAFT_05673 0.51 +0.3
90,390 + H281DRAFT_05673 0.51 +0.2
90,391 - H281DRAFT_05673 0.52 +1.0
90,391 - H281DRAFT_05673 0.52 +0.9
90,391 - H281DRAFT_05673 0.52 -1.2
90,614 + +1.2
90,634 + +0.2
90,634 + +1.0
90,645 - -1.2
90,738 + +0.5
90,738 + +0.6
90,738 + +1.9
90,738 + +2.4
90,739 - -0.1
90,886 + -0.5
90,938 + -0.6
90,939 - +0.5
90,950 + +0.0
90,950 + +1.0
90,950 + +1.0
90,951 - -0.6
90,951 - -0.1
90,981 - +0.6
90,981 - +0.4
90,983 + -0.2
90,984 - -1.2
90,984 - -0.5
91,070 + -0.0
91,070 + -1.2
91,237 + H281DRAFT_05675 0.12 +0.4
91,444 + H281DRAFT_05675 0.30 -0.4
91,445 - H281DRAFT_05675 0.30 +0.2
91,498 + H281DRAFT_05675 0.35 -0.1
91,499 - H281DRAFT_05675 0.35 +0.7
91,499 - H281DRAFT_05675 0.35 -0.4
91,622 - H281DRAFT_05675 0.46 -0.7
91,622 - H281DRAFT_05675 0.46 +0.3
91,654 + H281DRAFT_05675 0.49 -0.1
91,654 + H281DRAFT_05675 0.49 -1.2
91,655 - H281DRAFT_05675 0.49 -1.2
91,655 - +0.6
91,831 + H281DRAFT_05675 0.64 +0.3
91,952 - H281DRAFT_05675 0.75 -0.2
92,108 + H281DRAFT_05675 0.89 -0.2
92,108 + H281DRAFT_05675 0.89 +0.0
92,108 + H281DRAFT_05675 0.89 +0.5
92,109 - H281DRAFT_05675 0.89 +0.0
92,109 - H281DRAFT_05675 0.89 +0.1
92,109 - H281DRAFT_05675 0.89 -0.5
92,109 - H281DRAFT_05675 0.89 +0.3
92,109 - H281DRAFT_05675 0.89 -0.1
92,109 - H281DRAFT_05675 0.89 +0.5
92,131 - -1.0
92,154 + +0.5
92,199 + +0.2
92,349 + -0.3
92,350 - -1.0
92,518 + H281DRAFT_05676 0.20 +1.5
92,565 - H281DRAFT_05676 0.23 +0.1
92,576 + H281DRAFT_05676 0.24 +0.2
92,577 - +0.2
92,704 + H281DRAFT_05676 0.34 -0.4
92,760 + +2.2
92,760 + H281DRAFT_05676 0.38 -0.9
92,761 - H281DRAFT_05676 0.38 -0.1
92,761 - H281DRAFT_05676 0.38 +0.3
92,892 + H281DRAFT_05676 0.48 +0.4
92,893 - H281DRAFT_05676 0.49 +0.1
93,039 + H281DRAFT_05676 0.60 -0.0
93,039 + H281DRAFT_05676 0.60 +0.2
93,039 + H281DRAFT_05676 0.60 +0.5
93,040 - +0.2
93,040 - H281DRAFT_05676 0.60 +0.1
93,074 + H281DRAFT_05676 0.62 +0.4
93,075 - H281DRAFT_05676 0.63 +0.4
93,075 - H281DRAFT_05676 0.63 -1.2
93,075 - H281DRAFT_05676 0.63 +0.4
93,075 - H281DRAFT_05676 0.63 -0.5
93,075 - H281DRAFT_05676 0.63 +0.3
93,082 + H281DRAFT_05676 0.63 -0.4
93,082 + H281DRAFT_05676 0.63 +0.1

Or see this region's nucleotide sequence