Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05618

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05616 and H281DRAFT_05617 are separated by 246 nucleotidesH281DRAFT_05617 and H281DRAFT_05618 are separated by 371 nucleotidesH281DRAFT_05618 and H281DRAFT_05619 are separated by 187 nucleotides H281DRAFT_05616: H281DRAFT_05616 - dGTPase, at 37,128 to 38,333 _05616 H281DRAFT_05617: H281DRAFT_05617 - Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family, at 38,580 to 38,960 _05617 H281DRAFT_05618: H281DRAFT_05618 - outer membrane protein, at 39,332 to 40,057 _05618 H281DRAFT_05619: H281DRAFT_05619 - putative transposase, at 40,245 to 40,952 _05619 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 38.402 kb on - strandat 38.434 kb on - strandat 38.470 kb on + strandat 38.471 kb on - strandat 38.668 kb on + strand, within H281DRAFT_05617at 38.668 kb on + strand, within H281DRAFT_05617at 38.668 kb on + strand, within H281DRAFT_05617at 38.669 kb on - strand, within H281DRAFT_05617at 38.669 kb on - strand, within H281DRAFT_05617at 38.832 kb on + strand, within H281DRAFT_05617at 38.833 kb on - strand, within H281DRAFT_05617at 38.833 kb on - strand, within H281DRAFT_05617at 38.888 kb on + strand, within H281DRAFT_05617at 38.889 kb on - strand, within H281DRAFT_05617at 38.961 kb on - strandat 38.961 kb on - strandat 39.110 kb on + strandat 39.110 kb on + strandat 39.145 kb on - strandat 39.180 kb on - strandat 39.309 kb on + strandat 39.310 kb on - strandat 39.310 kb on - strandat 39.310 kb on - strandat 39.334 kb on - strandat 39.358 kb on - strandat 39.358 kb on - strandat 39.410 kb on - strand, within H281DRAFT_05618at 39.507 kb on + strand, within H281DRAFT_05618at 39.507 kb on + strand, within H281DRAFT_05618at 39.508 kb on - strand, within H281DRAFT_05618at 39.508 kb on - strand, within H281DRAFT_05618at 39.524 kb on - strand, within H281DRAFT_05618at 39.544 kb on + strand, within H281DRAFT_05618at 39.545 kb on - strand, within H281DRAFT_05618at 39.545 kb on - strand, within H281DRAFT_05618at 39.550 kb on + strand, within H281DRAFT_05618at 39.551 kb on - strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.649 kb on - strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.682 kb on - strand, within H281DRAFT_05618at 39.682 kb on - strand, within H281DRAFT_05618at 39.684 kb on + strand, within H281DRAFT_05618at 39.684 kb on + strand, within H281DRAFT_05618at 39.685 kb on - strand, within H281DRAFT_05618at 39.823 kb on - strand, within H281DRAFT_05618at 40.049 kb on + strandat 40.050 kb on - strandat 40.057 kb on + strandat 40.058 kb on - strandat 40.058 kb on - strandat 40.058 kb on - strandat 40.087 kb on + strandat 40.087 kb on + strandat 40.087 kb on + strandat 40.088 kb on - strandat 40.108 kb on + strandat 40.108 kb on + strandat 40.108 kb on + strandat 40.114 kb on + strandat 40.139 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.214 kb on - strandat 40.217 kb on + strandat 40.218 kb on - strandat 40.218 kb on - strandat 40.236 kb on + strandat 40.237 kb on - strandat 40.237 kb on - strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.342 kb on - strand, within H281DRAFT_05619at 40.361 kb on + strand, within H281DRAFT_05619at 40.361 kb on + strand, within H281DRAFT_05619at 40.390 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.405 kb on - strand, within H281DRAFT_05619at 40.495 kb on - strand, within H281DRAFT_05619at 40.495 kb on - strand, within H281DRAFT_05619at 40.654 kb on - strand, within H281DRAFT_05619at 40.669 kb on - strand, within H281DRAFT_05619at 40.722 kb on + strand, within H281DRAFT_05619at 40.722 kb on + strand, within H281DRAFT_05619at 40.723 kb on - strand, within H281DRAFT_05619at 40.723 kb on - strand, within H281DRAFT_05619at 40.739 kb on + strand, within H281DRAFT_05619at 40.857 kb on + strand, within H281DRAFT_05619at 40.858 kb on - strand, within H281DRAFT_05619at 40.951 kb on - strandat 40.951 kb on - strandat 41.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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38,402 - +0.0
38,434 - +0.3
38,470 + +0.4
38,471 - +0.4
38,668 + H281DRAFT_05617 0.23 -0.5
38,668 + H281DRAFT_05617 0.23 +0.2
38,668 + H281DRAFT_05617 0.23 +0.4
38,669 - H281DRAFT_05617 0.23 -0.6
38,669 - H281DRAFT_05617 0.23 +0.7
38,832 + H281DRAFT_05617 0.66 -0.2
38,833 - H281DRAFT_05617 0.66 -0.2
38,833 - H281DRAFT_05617 0.66 +0.4
38,888 + H281DRAFT_05617 0.81 -0.2
38,889 - H281DRAFT_05617 0.81 +0.2
38,961 - -0.5
38,961 - +0.3
39,110 + +0.5
39,110 + -0.3
39,145 - -0.9
39,180 - +0.4
39,309 + -0.8
39,310 - +1.1
39,310 - +0.1
39,310 - +0.2
39,334 - -1.4
39,358 - -1.8
39,358 - -1.7
39,410 - H281DRAFT_05618 0.11 -1.2
39,507 + H281DRAFT_05618 0.24 +0.6
39,507 + H281DRAFT_05618 0.24 -0.1
39,508 - H281DRAFT_05618 0.24 -1.7
39,508 - H281DRAFT_05618 0.24 -1.8
39,524 - H281DRAFT_05618 0.26 -1.6
39,544 + H281DRAFT_05618 0.29 -2.5
39,545 - H281DRAFT_05618 0.29 -1.6
39,545 - H281DRAFT_05618 0.29 -1.0
39,550 + H281DRAFT_05618 0.30 -1.8
39,551 - H281DRAFT_05618 0.30 -1.4
39,625 + H281DRAFT_05618 0.40 -1.3
39,625 + H281DRAFT_05618 0.40 -1.3
39,625 + H281DRAFT_05618 0.40 -1.4
39,625 + H281DRAFT_05618 0.40 -1.4
39,626 - H281DRAFT_05618 0.40 -1.2
39,626 - H281DRAFT_05618 0.40 -0.3
39,626 - H281DRAFT_05618 0.40 -1.2
39,626 - H281DRAFT_05618 0.40 -1.4
39,626 - H281DRAFT_05618 0.40 -0.5
39,649 - H281DRAFT_05618 0.44 -0.9
39,681 + H281DRAFT_05618 0.48 -1.3
39,681 + H281DRAFT_05618 0.48 -0.2
39,681 + H281DRAFT_05618 0.48 -1.7
39,681 + H281DRAFT_05618 0.48 -1.0
39,682 - H281DRAFT_05618 0.48 -0.8
39,682 - H281DRAFT_05618 0.48 -0.7
39,684 + H281DRAFT_05618 0.48 -1.1
39,684 + H281DRAFT_05618 0.48 -1.0
39,685 - H281DRAFT_05618 0.49 -0.6
39,823 - H281DRAFT_05618 0.68 -0.7
40,049 + -1.8
40,050 - -2.6
40,057 + -1.6
40,058 - +0.2
40,058 - +0.1
40,058 - -0.2
40,087 + -0.4
40,087 + -0.8
40,087 + -1.6
40,088 - +0.5
40,108 + -1.8
40,108 + -1.2
40,108 + -2.2
40,114 + -0.3
40,139 + -0.1
40,213 + +0.9
40,213 + -0.7
40,213 + +0.2
40,213 + +0.1
40,213 + +0.1
40,214 - +0.3
40,217 + +0.2
40,218 - +0.2
40,218 - +0.3
40,236 + -1.0
40,237 - +0.1
40,237 - +0.3
40,266 + +0.3
40,266 + -0.2
40,266 + -0.3
40,266 + +0.1
40,267 - -0.4
40,267 - +0.4
40,267 - +0.3
40,267 - +0.1
40,267 - +0.8
40,267 - +1.0
40,342 - H281DRAFT_05619 0.14 -0.4
40,361 + H281DRAFT_05619 0.16 -0.5
40,361 + H281DRAFT_05619 0.16 +0.6
40,390 + H281DRAFT_05619 0.20 +0.2
40,404 + H281DRAFT_05619 0.22 -0.4
40,404 + H281DRAFT_05619 0.22 +0.5
40,404 + H281DRAFT_05619 0.22 +1.0
40,404 + H281DRAFT_05619 0.22 -0.2
40,405 - H281DRAFT_05619 0.23 +1.2
40,495 - H281DRAFT_05619 0.35 +0.7
40,495 - H281DRAFT_05619 0.35 +0.2
40,654 - H281DRAFT_05619 0.58 +0.0
40,669 - H281DRAFT_05619 0.60 -0.5
40,722 + H281DRAFT_05619 0.67 +0.2
40,722 + H281DRAFT_05619 0.67 +0.1
40,723 - H281DRAFT_05619 0.68 -0.3
40,723 - H281DRAFT_05619 0.68 +0.3
40,739 + H281DRAFT_05619 0.70 +0.6
40,857 + H281DRAFT_05619 0.86 -0.3
40,858 - H281DRAFT_05619 0.87 -0.6
40,951 - +0.7
40,951 - -0.7
41,004 + -0.2

Or see this region's nucleotide sequence