Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04270

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04268 and H281DRAFT_04269 overlap by 1 nucleotidesH281DRAFT_04269 and H281DRAFT_04270 are separated by 82 nucleotidesH281DRAFT_04270 and H281DRAFT_04271 are separated by 285 nucleotides H281DRAFT_04268: H281DRAFT_04268 - L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein, at 386,091 to 386,768 _04268 H281DRAFT_04269: H281DRAFT_04269 - L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein, at 386,768 to 387,508 _04269 H281DRAFT_04270: H281DRAFT_04270 - L-glutamate-binding protein /L-aspartate-binding protein, at 387,591 to 388,484 _04270 H281DRAFT_04271: H281DRAFT_04271 - glutamate dehydrogenase (NAD(P)+), at 388,770 to 390,083 _04271 Position (kb) 387 388 389Strain fitness (log2 ratio) -1 0 1at 386.593 kb on + strand, within H281DRAFT_04268at 386.593 kb on + strand, within H281DRAFT_04268at 386.594 kb on - strand, within H281DRAFT_04268at 386.594 kb on - strand, within H281DRAFT_04268at 386.782 kb on + strandat 386.784 kb on + strandat 386.853 kb on + strand, within H281DRAFT_04269at 386.883 kb on + strand, within H281DRAFT_04269at 386.883 kb on + strand, within H281DRAFT_04269at 386.884 kb on - strand, within H281DRAFT_04269at 386.899 kb on - strand, within H281DRAFT_04269at 386.974 kb on + strand, within H281DRAFT_04269at 386.974 kb on + strand, within H281DRAFT_04269at 386.974 kb on + strand, within H281DRAFT_04269at 386.975 kb on - strand, within H281DRAFT_04269at 386.975 kb on - strand, within H281DRAFT_04269at 387.036 kb on + strand, within H281DRAFT_04269at 387.036 kb on + strand, within H281DRAFT_04269at 387.243 kb on - strand, within H281DRAFT_04269at 387.252 kb on + strand, within H281DRAFT_04269at 387.253 kb on - strand, within H281DRAFT_04269at 387.253 kb on - strand, within H281DRAFT_04269at 387.304 kb on - strand, within H281DRAFT_04269at 387.304 kb on - strand, within H281DRAFT_04269at 387.444 kb on + strandat 387.444 kb on + strandat 387.445 kb on - strandat 387.445 kb on - strandat 387.501 kb on + strandat 387.502 kb on - strandat 387.502 kb on - strandat 387.502 kb on - strandat 387.585 kb on + strandat 387.585 kb on + strandat 387.586 kb on - strandat 387.586 kb on - strandat 387.592 kb on + strandat 387.704 kb on - strand, within H281DRAFT_04270at 387.704 kb on - strand, within H281DRAFT_04270at 387.799 kb on + strand, within H281DRAFT_04270at 387.800 kb on - strand, within H281DRAFT_04270at 388.151 kb on + strand, within H281DRAFT_04270at 388.206 kb on - strand, within H281DRAFT_04270at 388.333 kb on + strand, within H281DRAFT_04270at 388.333 kb on + strand, within H281DRAFT_04270at 388.337 kb on - strand, within H281DRAFT_04270at 388.376 kb on + strand, within H281DRAFT_04270at 388.407 kb on - strandat 388.518 kb on + strandat 388.526 kb on + strandat 388.530 kb on + strandat 388.530 kb on + strandat 388.541 kb on + strandat 388.541 kb on + strandat 388.547 kb on + strandat 388.548 kb on - strandat 388.548 kb on - strandat 388.549 kb on + strandat 388.550 kb on - strandat 388.550 kb on - strandat 388.602 kb on + strandat 388.620 kb on + strandat 388.623 kb on - strandat 388.623 kb on - strandat 388.623 kb on - strandat 388.623 kb on - strandat 388.623 kb on - strandat 388.623 kb on - strandat 388.733 kb on + strandat 388.734 kb on - strandat 388.758 kb on + strandat 388.758 kb on + strandat 388.759 kb on - strandat 388.759 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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386,593 + H281DRAFT_04268 0.74 +1.1
386,593 + H281DRAFT_04268 0.74 -0.0
386,594 - H281DRAFT_04268 0.74 +0.6
386,594 - H281DRAFT_04268 0.74 +0.2
386,782 + -0.2
386,784 + +0.7
386,853 + H281DRAFT_04269 0.11 +1.3
386,883 + H281DRAFT_04269 0.16 +0.3
386,883 + H281DRAFT_04269 0.16 +0.5
386,884 - H281DRAFT_04269 0.16 +0.5
386,899 - H281DRAFT_04269 0.18 +0.1
386,974 + H281DRAFT_04269 0.28 +1.2
386,974 + H281DRAFT_04269 0.28 +0.3
386,974 + H281DRAFT_04269 0.28 -0.6
386,975 - H281DRAFT_04269 0.28 -0.4
386,975 - H281DRAFT_04269 0.28 +0.3
387,036 + H281DRAFT_04269 0.36 -0.7
387,036 + H281DRAFT_04269 0.36 +0.4
387,243 - H281DRAFT_04269 0.64 +1.4
387,252 + H281DRAFT_04269 0.65 +0.3
387,253 - H281DRAFT_04269 0.65 -0.0
387,253 - H281DRAFT_04269 0.65 +0.6
387,304 - H281DRAFT_04269 0.72 +0.4
387,304 - H281DRAFT_04269 0.72 +0.5
387,444 + +0.4
387,444 + -0.3
387,445 - +0.4
387,445 - +0.1
387,501 + +0.4
387,502 - +1.4
387,502 - -0.6
387,502 - +0.5
387,585 + +0.7
387,585 + +1.1
387,586 - +0.5
387,586 - -0.1
387,592 + -0.3
387,704 - H281DRAFT_04270 0.13 +0.5
387,704 - H281DRAFT_04270 0.13 +0.4
387,799 + H281DRAFT_04270 0.23 +0.3
387,800 - H281DRAFT_04270 0.23 +1.6
388,151 + H281DRAFT_04270 0.63 +1.2
388,206 - H281DRAFT_04270 0.69 +0.4
388,333 + H281DRAFT_04270 0.83 +0.6
388,333 + H281DRAFT_04270 0.83 +0.3
388,337 - H281DRAFT_04270 0.83 +0.6
388,376 + H281DRAFT_04270 0.88 +0.8
388,407 - -0.5
388,518 + +0.2
388,526 + -0.3
388,530 + +0.3
388,530 + +0.3
388,541 + +1.0
388,541 + +0.2
388,547 + +0.4
388,548 - +0.2
388,548 - -0.4
388,549 + +1.0
388,550 - -0.1
388,550 - -0.0
388,602 + +0.4
388,620 + -0.1
388,623 - -0.4
388,623 - +0.3
388,623 - -0.1
388,623 - +0.1
388,623 - +1.5
388,623 - +0.7
388,733 + +0.2
388,734 - +0.1
388,758 + +0.7
388,758 + +1.0
388,759 - -0.3
388,759 - +0.5

Or see this region's nucleotide sequence