Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02919

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02917 and H281DRAFT_02918 are separated by 245 nucleotidesH281DRAFT_02918 and H281DRAFT_02919 are separated by 220 nucleotidesH281DRAFT_02919 and H281DRAFT_02920 are separated by 110 nucleotides H281DRAFT_02917: H281DRAFT_02917 - DNA topoisomerase-1, at 523,213 to 524,565 _02917 H281DRAFT_02918: H281DRAFT_02918 - Uncharacterized protein conserved in bacteria, at 524,811 to 525,326 _02918 H281DRAFT_02919: H281DRAFT_02919 - Protein of unknown function (DUF3175), at 525,547 to 525,966 _02919 H281DRAFT_02920: H281DRAFT_02920 - sodium/proton antiporter, CPA1 family, at 526,077 to 527,396 _02920 Position (kb) 525 526Strain fitness (log2 ratio) -1 0 1at 524.575 kb on + strandat 524.576 kb on - strandat 524.852 kb on + strandat 524.853 kb on - strandat 525.226 kb on - strand, within H281DRAFT_02918at 525.263 kb on - strand, within H281DRAFT_02918at 525.275 kb on + strandat 525.324 kb on + strandat 525.325 kb on - strandat 525.530 kb on - strandat 525.868 kb on + strand, within H281DRAFT_02919at 526.179 kb on + strandat 526.180 kb on - strandat 526.180 kb on - strandat 526.676 kb on - strand, within H281DRAFT_02920at 526.703 kb on - strand, within H281DRAFT_02920

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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524,575 + +0.9
524,576 - -0.2
524,852 + -0.2
524,853 - +0.8
525,226 - H281DRAFT_02918 0.80 +0.7
525,263 - H281DRAFT_02918 0.88 +0.3
525,275 + -0.4
525,324 + +0.7
525,325 - -0.1
525,530 - +0.2
525,868 + H281DRAFT_02919 0.76 +0.1
526,179 + +0.5
526,180 - -0.3
526,180 - -0.1
526,676 - H281DRAFT_02920 0.45 -0.0
526,703 - H281DRAFT_02920 0.47 -1.1

Or see this region's nucleotide sequence