Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02217

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02216 and H281DRAFT_02217 overlap by 4 nucleotidesH281DRAFT_02217 and H281DRAFT_02218 are separated by 90 nucleotidesH281DRAFT_02218 and H281DRAFT_02219 are separated by 57 nucleotides H281DRAFT_02216: H281DRAFT_02216 - MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG, at 358,676 to 360,070 _02216 H281DRAFT_02217: H281DRAFT_02217 - Peptidase family M48, at 360,067 to 361,350 _02217 H281DRAFT_02218: H281DRAFT_02218 - exodeoxyribonuclease-3, at 361,441 to 362,220 _02218 H281DRAFT_02219: H281DRAFT_02219 - polyphosphate:nucleotide phosphotransferase, PPK2 family, at 362,278 to 363,114 _02219 Position (kb) 360 361 362Strain fitness (log2 ratio) -2 -1 0 1 2at 359.183 kb on + strand, within H281DRAFT_02216at 359.183 kb on + strand, within H281DRAFT_02216at 359.183 kb on + strandat 359.184 kb on - strand, within H281DRAFT_02216at 359.199 kb on + strand, within H281DRAFT_02216at 359.199 kb on + strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.202 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.700 kb on - strand, within H281DRAFT_02216at 359.827 kb on + strand, within H281DRAFT_02216at 359.827 kb on + strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.886 kb on - strand, within H281DRAFT_02216at 359.991 kb on - strandat 360.121 kb on + strandat 360.205 kb on + strand, within H281DRAFT_02217at 360.206 kb on - strand, within H281DRAFT_02217at 360.532 kb on + strand, within H281DRAFT_02217at 360.565 kb on + strand, within H281DRAFT_02217at 360.579 kb on + strand, within H281DRAFT_02217at 360.579 kb on + strand, within H281DRAFT_02217at 360.640 kb on + strand, within H281DRAFT_02217at 360.667 kb on + strand, within H281DRAFT_02217at 360.727 kb on + strand, within H281DRAFT_02217at 360.801 kb on + strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.806 kb on - strand, within H281DRAFT_02217at 360.806 kb on - strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.836 kb on - strand, within H281DRAFT_02217at 360.836 kb on - strand, within H281DRAFT_02217at 360.989 kb on + strand, within H281DRAFT_02217at 360.989 kb on + strand, within H281DRAFT_02217at 360.990 kb on - strand, within H281DRAFT_02217at 361.054 kb on + strand, within H281DRAFT_02217at 361.195 kb on + strand, within H281DRAFT_02217at 361.196 kb on - strand, within H281DRAFT_02217at 361.208 kb on - strand, within H281DRAFT_02217at 361.265 kb on - strandat 361.265 kb on - strandat 361.404 kb on + strandat 361.404 kb on + strandat 361.405 kb on - strandat 361.405 kb on - strandat 361.405 kb on - strandat 361.619 kb on + strand, within H281DRAFT_02218at 361.619 kb on + strandat 361.620 kb on - strandat 361.620 kb on - strand, within H281DRAFT_02218at 361.652 kb on - strandat 361.652 kb on - strand, within H281DRAFT_02218at 361.652 kb on - strand, within H281DRAFT_02218at 361.850 kb on + strand, within H281DRAFT_02218at 361.851 kb on - strand, within H281DRAFT_02218at 361.895 kb on + strand, within H281DRAFT_02218at 361.896 kb on - strand, within H281DRAFT_02218at 362.004 kb on + strand, within H281DRAFT_02218at 362.004 kb on + strand, within H281DRAFT_02218at 362.005 kb on - strand, within H281DRAFT_02218at 362.005 kb on - strand, within H281DRAFT_02218at 362.006 kb on + strand, within H281DRAFT_02218at 362.007 kb on - strand, within H281DRAFT_02218at 362.205 kb on + strandat 362.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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359,183 + H281DRAFT_02216 0.36 +0.2
359,183 + H281DRAFT_02216 0.36 -1.1
359,183 + -0.3
359,184 - H281DRAFT_02216 0.36 -0.7
359,199 + H281DRAFT_02216 0.37 -0.8
359,199 + H281DRAFT_02216 0.37 +0.2
359,200 - H281DRAFT_02216 0.38 +0.5
359,200 - H281DRAFT_02216 0.38 +0.5
359,200 - H281DRAFT_02216 0.38 -0.2
359,202 + H281DRAFT_02216 0.38 +0.1
359,699 + H281DRAFT_02216 0.73 +0.2
359,699 + H281DRAFT_02216 0.73 +0.1
359,699 + H281DRAFT_02216 0.73 +0.3
359,699 + H281DRAFT_02216 0.73 -0.3
359,700 - H281DRAFT_02216 0.73 -0.5
359,827 + H281DRAFT_02216 0.83 +0.3
359,827 + H281DRAFT_02216 0.83 +0.2
359,859 - H281DRAFT_02216 0.85 +0.0
359,859 - H281DRAFT_02216 0.85 +0.0
359,859 - H281DRAFT_02216 0.85 -1.3
359,859 - H281DRAFT_02216 0.85 -0.1
359,886 - H281DRAFT_02216 0.87 -0.0
359,991 - -0.1
360,121 + +0.8
360,205 + H281DRAFT_02217 0.11 -1.4
360,206 - H281DRAFT_02217 0.11 +0.4
360,532 + H281DRAFT_02217 0.36 +0.2
360,565 + H281DRAFT_02217 0.39 -0.1
360,579 + H281DRAFT_02217 0.40 +1.5
360,579 + H281DRAFT_02217 0.40 -0.1
360,640 + H281DRAFT_02217 0.45 +0.3
360,667 + H281DRAFT_02217 0.47 -0.4
360,727 + H281DRAFT_02217 0.51 +0.0
360,801 + H281DRAFT_02217 0.57 +1.8
360,802 - H281DRAFT_02217 0.57 +0.5
360,802 - H281DRAFT_02217 0.57 -2.3
360,802 - H281DRAFT_02217 0.57 -0.3
360,802 - H281DRAFT_02217 0.57 -0.1
360,805 + H281DRAFT_02217 0.57 +0.2
360,805 + H281DRAFT_02217 0.57 -0.2
360,805 + H281DRAFT_02217 0.57 +0.4
360,805 + H281DRAFT_02217 0.57 +0.6
360,806 - H281DRAFT_02217 0.58 +0.3
360,806 - H281DRAFT_02217 0.58 -0.5
360,835 + H281DRAFT_02217 0.60 +0.4
360,835 + H281DRAFT_02217 0.60 +0.2
360,835 + H281DRAFT_02217 0.60 +0.9
360,835 + H281DRAFT_02217 0.60 -1.3
360,836 - H281DRAFT_02217 0.60 +0.5
360,836 - H281DRAFT_02217 0.60 -0.5
360,989 + H281DRAFT_02217 0.72 +0.1
360,989 + H281DRAFT_02217 0.72 -0.1
360,990 - H281DRAFT_02217 0.72 -0.1
361,054 + H281DRAFT_02217 0.77 -0.1
361,195 + H281DRAFT_02217 0.88 -0.3
361,196 - H281DRAFT_02217 0.88 +0.1
361,208 - H281DRAFT_02217 0.89 -0.2
361,265 - +0.8
361,265 - -0.2
361,404 + +0.0
361,404 + +0.1
361,405 - +0.2
361,405 - +0.7
361,405 - +0.2
361,619 + H281DRAFT_02218 0.23 +1.7
361,619 + +2.5
361,620 - +1.2
361,620 - H281DRAFT_02218 0.23 -0.1
361,652 - -0.3
361,652 - H281DRAFT_02218 0.27 -0.0
361,652 - H281DRAFT_02218 0.27 -0.1
361,850 + H281DRAFT_02218 0.52 +0.1
361,851 - H281DRAFT_02218 0.53 -0.3
361,895 + H281DRAFT_02218 0.58 -0.8
361,896 - H281DRAFT_02218 0.58 +0.6
362,004 + H281DRAFT_02218 0.72 +0.4
362,004 + H281DRAFT_02218 0.72 -0.5
362,005 - H281DRAFT_02218 0.72 +0.1
362,005 - H281DRAFT_02218 0.72 -0.1
362,006 + H281DRAFT_02218 0.72 +0.9
362,007 - H281DRAFT_02218 0.73 +0.8
362,205 + +0.2
362,346 + -0.3

Or see this region's nucleotide sequence