Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03631 and CCNA_03632 are separated by 47 nucleotides CCNA_03632 and CCNA_03633 are separated by 342 nucleotides CCNA_03633 and CCNA_03634 are separated by 165 nucleotides CCNA_03634 and CCNA_03996 are separated by 53 nucleotides CCNA_03996 and CCNA_03635 overlap by 4 nucleotides
CCNA_03631: CCNA_03631 - hypothetical protein, at 3,786,985 to 3,787,089
_03631
CCNA_03632: CCNA_03632 - hypothetical protein, at 3,787,137 to 3,787,517
_03632
CCNA_03633: CCNA_03633 - GIY-YIG domain protein, at 3,787,860 to 3,788,231
_03633
CCNA_03634: CCNA_03634 - DoxX family protein, at 3,788,397 to 3,788,990
_03634
CCNA_03996: CCNA_03996 - hypothetical protein, at 3,789,044 to 3,789,103
_03996
CCNA_03635: CCNA_03635 - hypothetical protein, at 3,789,100 to 3,789,477
_03635
Position (kb)
3787
3788
3789 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3786.884 kb on + strand at 3786.893 kb on - strand at 3786.915 kb on + strand at 3786.923 kb on - strand at 3786.952 kb on - strand at 3786.971 kb on + strand at 3786.971 kb on + strand at 3786.983 kb on + strand at 3786.993 kb on - strand at 3787.117 kb on + strand at 3787.128 kb on + strand at 3787.136 kb on - strand at 3787.142 kb on - strand at 3787.145 kb on + strand at 3787.231 kb on + strand, within CCNA_03632 at 3787.273 kb on - strand, within CCNA_03632 at 3787.292 kb on - strand, within CCNA_03632 at 3787.378 kb on + strand, within CCNA_03632 at 3787.386 kb on - strand, within CCNA_03632 at 3787.416 kb on + strand, within CCNA_03632 at 3787.425 kb on - strand, within CCNA_03632 at 3787.434 kb on + strand, within CCNA_03632 at 3787.441 kb on - strand, within CCNA_03632 at 3787.465 kb on + strand, within CCNA_03632 at 3787.471 kb on + strand, within CCNA_03632 at 3787.473 kb on - strand, within CCNA_03632 at 3787.485 kb on + strand at 3787.485 kb on + strand at 3787.487 kb on - strand at 3787.501 kb on - strand at 3787.560 kb on + strand at 3787.588 kb on - strand at 3787.638 kb on + strand at 3787.684 kb on - strand at 3787.710 kb on - strand at 3787.745 kb on - strand at 3787.778 kb on + strand at 3787.780 kb on + strand at 3787.913 kb on + strand, within CCNA_03633 at 3787.956 kb on - strand, within CCNA_03633 at 3788.060 kb on - strand, within CCNA_03633 at 3788.201 kb on - strand at 3788.224 kb on + strand at 3788.224 kb on + strand at 3788.224 kb on + strand at 3788.243 kb on + strand at 3788.251 kb on - strand at 3788.251 kb on - strand at 3788.251 kb on - strand at 3788.251 kb on - strand at 3788.256 kb on - strand at 3788.261 kb on - strand at 3788.303 kb on + strand at 3788.311 kb on - strand at 3788.330 kb on - strand at 3788.373 kb on + strand at 3788.376 kb on - strand at 3788.390 kb on - strand at 3788.432 kb on + strand at 3788.440 kb on - strand at 3788.455 kb on - strand at 3788.475 kb on - strand, within CCNA_03634 at 3788.487 kb on + strand, within CCNA_03634 at 3788.490 kb on - strand, within CCNA_03634 at 3788.490 kb on - strand, within CCNA_03634 at 3788.492 kb on + strand, within CCNA_03634 at 3788.500 kb on - strand, within CCNA_03634 at 3788.500 kb on - strand, within CCNA_03634 at 3788.500 kb on - strand, within CCNA_03634 at 3788.531 kb on - strand, within CCNA_03634 at 3788.534 kb on + strand, within CCNA_03634 at 3788.554 kb on + strand, within CCNA_03634 at 3788.559 kb on + strand, within CCNA_03634 at 3788.576 kb on + strand, within CCNA_03634 at 3788.599 kb on - strand, within CCNA_03634 at 3788.599 kb on - strand, within CCNA_03634 at 3788.610 kb on + strand, within CCNA_03634 at 3788.644 kb on - strand, within CCNA_03634 at 3788.651 kb on + strand, within CCNA_03634 at 3788.653 kb on + strand, within CCNA_03634 at 3788.659 kb on - strand, within CCNA_03634 at 3788.702 kb on + strand, within CCNA_03634 at 3788.702 kb on + strand, within CCNA_03634 at 3788.725 kb on + strand, within CCNA_03634 at 3788.733 kb on - strand, within CCNA_03634 at 3788.733 kb on - strand, within CCNA_03634 at 3788.738 kb on - strand, within CCNA_03634 at 3788.778 kb on - strand, within CCNA_03634 at 3788.793 kb on - strand, within CCNA_03634 at 3788.821 kb on + strand, within CCNA_03634 at 3788.821 kb on + strand, within CCNA_03634 at 3788.829 kb on - strand, within CCNA_03634 at 3788.829 kb on - strand, within CCNA_03634 at 3788.829 kb on - strand, within CCNA_03634 at 3788.923 kb on + strand, within CCNA_03634 at 3788.931 kb on - strand at 3788.933 kb on - strand at 3788.933 kb on - strand at 3788.946 kb on + strand at 3788.954 kb on - strand at 3788.954 kb on - strand at 3788.954 kb on - strand at 3788.954 kb on - strand at 3788.991 kb on - strand at 3788.993 kb on + strand at 3788.993 kb on - strand at 3789.027 kb on + strand at 3789.126 kb on + strand at 3789.126 kb on + strand at 3789.150 kb on + strand, within CCNA_03635
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 3,786,884 + +0.0 3,786,893 - +2.3 3,786,915 + +0.7 3,786,923 - +1.9 3,786,952 - -0.9 3,786,971 + +1.6 3,786,971 + -1.0 3,786,983 + +0.8 3,786,993 - -1.3 3,787,117 + -0.2 3,787,128 + -2.5 3,787,136 - +0.6 3,787,142 - +1.3 3,787,145 + +0.8 3,787,231 + CCNA_03632 0.25 -1.5 3,787,273 - CCNA_03632 0.36 -0.1 3,787,292 - CCNA_03632 0.41 -1.7 3,787,378 + CCNA_03632 0.63 +1.8 3,787,386 - CCNA_03632 0.65 -1.2 3,787,416 + CCNA_03632 0.73 +0.5 3,787,425 - CCNA_03632 0.76 +0.4 3,787,434 + CCNA_03632 0.78 +0.9 3,787,441 - CCNA_03632 0.80 +0.3 3,787,465 + CCNA_03632 0.86 +1.5 3,787,471 + CCNA_03632 0.88 -0.2 3,787,473 - CCNA_03632 0.88 -2.5 3,787,485 + +0.7 3,787,485 + +0.7 3,787,487 - +0.1 3,787,501 - +2.6 3,787,560 + +1.2 3,787,588 - +0.4 3,787,638 + +0.5 3,787,684 - +1.8 3,787,710 - +1.0 3,787,745 - +0.1 3,787,778 + -1.4 3,787,780 + +3.1 3,787,913 + CCNA_03633 0.14 -1.1 3,787,956 - CCNA_03633 0.26 -0.9 3,788,060 - CCNA_03633 0.54 -1.5 3,788,201 - -0.6 3,788,224 + +3.9 3,788,224 + +0.7 3,788,224 + -1.1 3,788,243 + -0.2 3,788,251 - +0.1 3,788,251 - -1.4 3,788,251 - +1.6 3,788,251 - -0.4 3,788,256 - -0.4 3,788,261 - +0.0 3,788,303 + -0.5 3,788,311 - +0.4 3,788,330 - -0.5 3,788,373 + -0.6 3,788,376 - +0.0 3,788,390 - +2.2 3,788,432 + -0.7 3,788,440 - +2.1 3,788,455 - -0.1 3,788,475 - CCNA_03634 0.13 +1.1 3,788,487 + CCNA_03634 0.15 +1.6 3,788,490 - CCNA_03634 0.16 +1.1 3,788,490 - CCNA_03634 0.16 +2.1 3,788,492 + CCNA_03634 0.16 +0.4 3,788,500 - CCNA_03634 0.17 +1.9 3,788,500 - CCNA_03634 0.17 +0.7 3,788,500 - CCNA_03634 0.17 +1.2 3,788,531 - CCNA_03634 0.23 +0.7 3,788,534 + CCNA_03634 0.23 +0.6 3,788,554 + CCNA_03634 0.26 +0.1 3,788,559 + CCNA_03634 0.27 -0.3 3,788,576 + CCNA_03634 0.30 -1.2 3,788,599 - CCNA_03634 0.34 +2.7 3,788,599 - CCNA_03634 0.34 -1.4 3,788,610 + CCNA_03634 0.36 -1.8 3,788,644 - CCNA_03634 0.42 -0.4 3,788,651 + CCNA_03634 0.43 +0.4 3,788,653 + CCNA_03634 0.43 +1.4 3,788,659 - CCNA_03634 0.44 +0.7 3,788,702 + CCNA_03634 0.51 -0.4 3,788,702 + CCNA_03634 0.51 +0.4 3,788,725 + CCNA_03634 0.55 -0.2 3,788,733 - CCNA_03634 0.57 -2.6 3,788,733 - CCNA_03634 0.57 -0.2 3,788,738 - CCNA_03634 0.57 -0.5 3,788,778 - CCNA_03634 0.64 -1.3 3,788,793 - CCNA_03634 0.67 -1.0 3,788,821 + CCNA_03634 0.71 +0.8 3,788,821 + CCNA_03634 0.71 +0.3 3,788,829 - CCNA_03634 0.73 +0.7 3,788,829 - CCNA_03634 0.73 -0.5 3,788,829 - CCNA_03634 0.73 -0.6 3,788,923 + CCNA_03634 0.89 -0.2 3,788,931 - -0.7 3,788,933 - -0.6 3,788,933 - +0.8 3,788,946 + -1.4 3,788,954 - +0.8 3,788,954 - +0.8 3,788,954 - +2.6 3,788,954 - +0.3 3,788,991 - +0.9 3,788,993 + +0.7 3,788,993 - -0.1 3,789,027 + -0.9 3,789,126 + +0.9 3,789,126 + +0.2 3,789,150 + CCNA_03635 0.13 +2.6
Or see this region's nucleotide sequence