Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03106

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03104 and CCNA_03105 are separated by 175 nucleotidesCCNA_03105 and CCNA_03106 are separated by 56 nucleotidesCCNA_03106 and CCNA_03107 are separated by 217 nucleotidesCCNA_03107 and CCNA_03108 are separated by 124 nucleotides CCNA_03104: CCNA_03104 - 3-dehydroquinate synthase, at 3,254,540 to 3,255,652 _03104 CCNA_03105: CCNA_03105 - DnaJ domain protein, at 3,255,828 to 3,256,478 _03105 CCNA_03106: CCNA_03106 - BolA protein, at 3,256,535 to 3,256,810 _03106 CCNA_03107: CCNA_03107 - cytidine deaminase, at 3,257,028 to 3,257,450 _03107 CCNA_03108: CCNA_03108 - TonB-dependent outer membrane receptor, at 3,257,575 to 3,260,856 _03108 Position (kb) 3256 3257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3255.622 kb on - strandat 3255.647 kb on + strandat 3255.655 kb on - strandat 3255.655 kb on - strandat 3255.704 kb on + strandat 3255.744 kb on - strandat 3255.759 kb on + strandat 3255.772 kb on - strandat 3255.789 kb on + strandat 3255.789 kb on - strandat 3255.812 kb on + strandat 3255.820 kb on - strandat 3255.862 kb on - strandat 3255.862 kb on - strandat 3255.888 kb on - strandat 3255.900 kb on - strand, within CCNA_03105at 3255.936 kb on - strand, within CCNA_03105at 3255.936 kb on - strand, within CCNA_03105at 3256.051 kb on + strand, within CCNA_03105at 3256.059 kb on - strand, within CCNA_03105at 3256.091 kb on - strand, within CCNA_03105at 3256.195 kb on + strand, within CCNA_03105at 3256.197 kb on + strand, within CCNA_03105at 3256.207 kb on + strand, within CCNA_03105at 3256.212 kb on + strand, within CCNA_03105at 3256.215 kb on - strand, within CCNA_03105at 3256.220 kb on - strand, within CCNA_03105at 3256.220 kb on - strand, within CCNA_03105at 3256.220 kb on - strand, within CCNA_03105at 3256.220 kb on - strand, within CCNA_03105at 3256.282 kb on + strand, within CCNA_03105at 3256.290 kb on - strand, within CCNA_03105at 3256.338 kb on - strand, within CCNA_03105at 3256.364 kb on + strand, within CCNA_03105at 3256.383 kb on + strand, within CCNA_03105at 3256.416 kb on - strandat 3256.418 kb on + strandat 3256.418 kb on + strandat 3256.482 kb on + strandat 3256.487 kb on + strandat 3256.487 kb on + strandat 3256.487 kb on + strandat 3256.495 kb on - strandat 3256.514 kb on + strandat 3256.596 kb on + strand, within CCNA_03106at 3256.596 kb on + strand, within CCNA_03106at 3256.604 kb on - strand, within CCNA_03106at 3256.604 kb on - strand, within CCNA_03106at 3256.604 kb on - strand, within CCNA_03106at 3256.615 kb on - strand, within CCNA_03106at 3256.691 kb on + strand, within CCNA_03106at 3256.730 kb on - strand, within CCNA_03106at 3256.756 kb on + strand, within CCNA_03106at 3256.766 kb on + strand, within CCNA_03106at 3256.768 kb on - strand, within CCNA_03106at 3256.769 kb on - strand, within CCNA_03106at 3256.805 kb on + strandat 3256.805 kb on + strandat 3256.811 kb on - strandat 3256.846 kb on - strandat 3256.913 kb on - strandat 3256.994 kb on - strandat 3257.004 kb on + strandat 3257.023 kb on - strandat 3257.063 kb on - strandat 3257.155 kb on + strand, within CCNA_03107at 3257.160 kb on + strand, within CCNA_03107at 3257.168 kb on - strand, within CCNA_03107at 3257.168 kb on - strand, within CCNA_03107at 3257.279 kb on - strand, within CCNA_03107at 3257.279 kb on - strand, within CCNA_03107at 3257.301 kb on + strand, within CCNA_03107at 3257.301 kb on + strand, within CCNA_03107at 3257.306 kb on + strand, within CCNA_03107at 3257.306 kb on + strand, within CCNA_03107at 3257.306 kb on + strand, within CCNA_03107at 3257.347 kb on - strand, within CCNA_03107at 3257.370 kb on + strand, within CCNA_03107at 3257.433 kb on - strandat 3257.539 kb on - strandat 3257.641 kb on - strandat 3257.687 kb on + strandat 3257.707 kb on - strandat 3257.715 kb on + strandat 3257.734 kb on + strandat 3257.737 kb on + strandat 3257.754 kb on - strandat 3257.759 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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3,255,622 - -0.9
3,255,647 + +2.4
3,255,655 - -0.5
3,255,655 - +0.6
3,255,704 + +0.2
3,255,744 - +1.1
3,255,759 + +1.7
3,255,772 - +2.6
3,255,789 + +2.5
3,255,789 - +1.9
3,255,812 + -0.2
3,255,820 - +2.0
3,255,862 - +2.3
3,255,862 - +2.9
3,255,888 - +2.0
3,255,900 - CCNA_03105 0.11 +1.8
3,255,936 - CCNA_03105 0.17 +2.3
3,255,936 - CCNA_03105 0.17 +2.1
3,256,051 + CCNA_03105 0.34 -0.7
3,256,059 - CCNA_03105 0.35 +1.6
3,256,091 - CCNA_03105 0.40 +2.1
3,256,195 + CCNA_03105 0.56 -1.6
3,256,197 + CCNA_03105 0.57 +0.0
3,256,207 + CCNA_03105 0.58 +0.1
3,256,212 + CCNA_03105 0.59 -0.2
3,256,215 - CCNA_03105 0.59 +0.6
3,256,220 - CCNA_03105 0.60 +0.9
3,256,220 - CCNA_03105 0.60 +0.7
3,256,220 - CCNA_03105 0.60 +1.9
3,256,220 - CCNA_03105 0.60 +2.1
3,256,282 + CCNA_03105 0.70 -2.1
3,256,290 - CCNA_03105 0.71 +1.0
3,256,338 - CCNA_03105 0.78 +1.2
3,256,364 + CCNA_03105 0.82 -2.8
3,256,383 + CCNA_03105 0.85 +0.4
3,256,416 - +1.9
3,256,418 + +1.8
3,256,418 + -0.2
3,256,482 + -1.6
3,256,487 + +1.0
3,256,487 + +0.6
3,256,487 + +1.3
3,256,495 - -0.6
3,256,514 + +1.0
3,256,596 + CCNA_03106 0.22 -0.9
3,256,596 + CCNA_03106 0.22 -1.3
3,256,604 - CCNA_03106 0.25 -2.0
3,256,604 - CCNA_03106 0.25 +0.2
3,256,604 - CCNA_03106 0.25 -1.1
3,256,615 - CCNA_03106 0.29 -2.4
3,256,691 + CCNA_03106 0.57 -0.6
3,256,730 - CCNA_03106 0.71 +0.2
3,256,756 + CCNA_03106 0.80 -0.2
3,256,766 + CCNA_03106 0.84 -0.1
3,256,768 - CCNA_03106 0.84 -2.1
3,256,769 - CCNA_03106 0.85 -1.8
3,256,805 + +1.7
3,256,805 + -0.8
3,256,811 - +0.9
3,256,846 - +0.7
3,256,913 - +0.1
3,256,994 - +0.1
3,257,004 + +0.6
3,257,023 - +0.1
3,257,063 - +1.3
3,257,155 + CCNA_03107 0.30 +1.9
3,257,160 + CCNA_03107 0.31 +3.0
3,257,168 - CCNA_03107 0.33 +1.9
3,257,168 - CCNA_03107 0.33 -1.3
3,257,279 - CCNA_03107 0.59 +1.0
3,257,279 - CCNA_03107 0.59 +1.0
3,257,301 + CCNA_03107 0.65 +1.5
3,257,301 + CCNA_03107 0.65 +1.4
3,257,306 + CCNA_03107 0.66 +1.5
3,257,306 + CCNA_03107 0.66 +2.3
3,257,306 + CCNA_03107 0.66 +2.1
3,257,347 - CCNA_03107 0.75 +1.4
3,257,370 + CCNA_03107 0.81 +2.7
3,257,433 - +0.8
3,257,539 - +2.7
3,257,641 - +3.5
3,257,687 + -1.4
3,257,707 - +2.9
3,257,715 + -1.6
3,257,734 + +0.4
3,257,737 + -0.5
3,257,754 - +3.1
3,257,759 - +3.4

Or see this region's nucleotide sequence