Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02027

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02024 and CCNA_02025 are separated by 3 nucleotidesCCNA_02025 and CCNA_02026 overlap by 4 nucleotidesCCNA_02026 and CCNA_02027 are separated by 1 nucleotidesCCNA_02027 and CCNA_02028 overlap by 4 nucleotidesCCNA_02028 and CCNA_02029 overlap by 4 nucleotides CCNA_02024: CCNA_02024 - NADH-quinone oxidoreductase chain F, at 2,171,439 to 2,172,758 _02024 CCNA_02025: CCNA_02025 - hypothetical protein, at 2,172,762 to 2,173,028 _02025 CCNA_02026: CCNA_02026 - hypothetical protein, at 2,173,025 to 2,173,249 _02026 CCNA_02027: CCNA_02027 - NADH-quinone oxidoreductase chain E, at 2,173,251 to 2,173,937 _02027 CCNA_02028: CCNA_02028 - NTF2 superfamily protein, at 2,173,934 to 2,174,266 _02028 CCNA_02029: CCNA_02029 - NADH-quinone oxidoreductase chain D, at 2,174,263 to 2,175,513 _02029 Position (kb) 2173 2174Strain fitness (log2 ratio) -1 0 1 2 3 4at 2172.871 kb on + strand, within CCNA_02025at 2172.871 kb on + strand, within CCNA_02025at 2172.879 kb on - strand, within CCNA_02025at 2172.914 kb on - strand, within CCNA_02025at 2172.978 kb on - strand, within CCNA_02025at 2172.978 kb on - strand, within CCNA_02025at 2173.002 kb on - strandat 2173.185 kb on - strand, within CCNA_02026at 2173.185 kb on - strand, within CCNA_02026at 2173.220 kb on - strand, within CCNA_02026at 2173.234 kb on - strandat 2173.948 kb on - strandat 2174.000 kb on - strand, within CCNA_02028at 2174.159 kb on - strand, within CCNA_02028

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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2,172,871 + CCNA_02025 0.41 +1.4
2,172,871 + CCNA_02025 0.41 +0.6
2,172,879 - CCNA_02025 0.44 +3.2
2,172,914 - CCNA_02025 0.57 +3.8
2,172,978 - CCNA_02025 0.81 +2.8
2,172,978 - CCNA_02025 0.81 +3.6
2,173,002 - +3.6
2,173,185 - CCNA_02026 0.71 +3.7
2,173,185 - CCNA_02026 0.71 +3.8
2,173,220 - CCNA_02026 0.87 +3.4
2,173,234 - +3.0
2,173,948 - +4.3
2,174,000 - CCNA_02028 0.20 +4.1
2,174,159 - CCNA_02028 0.68 +3.8

Or see this region's nucleotide sequence