Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02024 and CCNA_02025 are separated by 3 nucleotides CCNA_02025 and CCNA_02026 overlap by 4 nucleotides CCNA_02026 and CCNA_02027 are separated by 1 nucleotides CCNA_02027 and CCNA_02028 overlap by 4 nucleotides CCNA_02028 and CCNA_02029 overlap by 4 nucleotides
CCNA_02024: CCNA_02024 - NADH-quinone oxidoreductase chain F, at 2,171,439 to 2,172,758
_02024
CCNA_02025: CCNA_02025 - hypothetical protein, at 2,172,762 to 2,173,028
_02025
CCNA_02026: CCNA_02026 - hypothetical protein, at 2,173,025 to 2,173,249
_02026
CCNA_02027: CCNA_02027 - NADH-quinone oxidoreductase chain E, at 2,173,251 to 2,173,937
_02027
CCNA_02028: CCNA_02028 - NTF2 superfamily protein, at 2,173,934 to 2,174,266
_02028
CCNA_02029: CCNA_02029 - NADH-quinone oxidoreductase chain D, at 2,174,263 to 2,175,513
_02029
Position (kb)
2173
2174 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2172.871 kb on + strand, within CCNA_02025 at 2172.871 kb on + strand, within CCNA_02025 at 2172.879 kb on - strand, within CCNA_02025 at 2172.914 kb on - strand, within CCNA_02025 at 2172.978 kb on - strand, within CCNA_02025 at 2172.978 kb on - strand, within CCNA_02025 at 2173.002 kb on - strand at 2173.185 kb on - strand, within CCNA_02026 at 2173.185 kb on - strand, within CCNA_02026 at 2173.220 kb on - strand, within CCNA_02026 at 2173.234 kb on - strand at 2173.948 kb on - strand at 2174.000 kb on - strand, within CCNA_02028 at 2174.159 kb on - strand, within CCNA_02028
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 2,172,871 + CCNA_02025 0.41 +1.4 2,172,871 + CCNA_02025 0.41 +0.6 2,172,879 - CCNA_02025 0.44 +3.2 2,172,914 - CCNA_02025 0.57 +3.8 2,172,978 - CCNA_02025 0.81 +2.8 2,172,978 - CCNA_02025 0.81 +3.6 2,173,002 - +3.6 2,173,185 - CCNA_02026 0.71 +3.7 2,173,185 - CCNA_02026 0.71 +3.8 2,173,220 - CCNA_02026 0.87 +3.4 2,173,234 - +3.0 2,173,948 - +4.3 2,174,000 - CCNA_02028 0.20 +4.1 2,174,159 - CCNA_02028 0.68 +3.8
Or see this region's nucleotide sequence