Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01674 and CCNA_01675 are separated by 252 nucleotides CCNA_01675 and CCNA_01676 are separated by 71 nucleotides
CCNA_01674: CCNA_01674 - circularly permuted ATP-grasp type 2 protein, at 1,795,962 to 1,797,482
_01674
CCNA_01675: CCNA_01675 - outer membrane protein, at 1,797,735 to 1,799,519
_01675
CCNA_01676: CCNA_01676 - hypothetical protein, at 1,799,591 to 1,803,712
_01676
Position (kb)
1797
1798
1799
1800 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1796.742 kb on + strand, within CCNA_01674 at 1796.750 kb on - strand, within CCNA_01674 at 1796.750 kb on - strand, within CCNA_01674 at 1796.805 kb on + strand, within CCNA_01674 at 1796.805 kb on + strand, within CCNA_01674 at 1796.813 kb on - strand, within CCNA_01674 at 1796.830 kb on + strand, within CCNA_01674 at 1796.902 kb on - strand, within CCNA_01674 at 1796.904 kb on + strand, within CCNA_01674 at 1796.979 kb on + strand, within CCNA_01674 at 1796.991 kb on + strand, within CCNA_01674 at 1796.999 kb on - strand, within CCNA_01674 at 1797.022 kb on + strand, within CCNA_01674 at 1797.022 kb on + strand, within CCNA_01674 at 1797.023 kb on + strand, within CCNA_01674 at 1797.030 kb on - strand, within CCNA_01674 at 1797.065 kb on + strand, within CCNA_01674 at 1797.080 kb on + strand, within CCNA_01674 at 1797.159 kb on - strand, within CCNA_01674 at 1797.166 kb on + strand, within CCNA_01674 at 1797.174 kb on - strand, within CCNA_01674 at 1797.174 kb on - strand, within CCNA_01674 at 1797.174 kb on - strand, within CCNA_01674 at 1797.249 kb on + strand, within CCNA_01674 at 1797.257 kb on + strand, within CCNA_01674 at 1797.265 kb on + strand, within CCNA_01674 at 1797.279 kb on - strand, within CCNA_01674 at 1797.281 kb on + strand, within CCNA_01674 at 1797.348 kb on + strand at 1797.443 kb on + strand at 1797.444 kb on + strand at 1797.445 kb on + strand at 1797.459 kb on - strand at 1797.462 kb on + strand at 1797.462 kb on + strand at 1797.516 kb on + strand at 1797.516 kb on + strand at 1797.516 kb on + strand at 1797.516 kb on + strand at 1797.516 kb on + strand at 1797.523 kb on + strand at 1797.523 kb on + strand at 1797.524 kb on - strand at 1797.524 kb on - strand at 1797.524 kb on - strand at 1797.524 kb on - strand at 1797.524 kb on - strand at 1797.524 kb on - strand at 1797.524 kb on - strand at 1797.531 kb on - strand at 1797.531 kb on - strand at 1797.539 kb on + strand at 1797.540 kb on + strand at 1797.547 kb on - strand at 1797.620 kb on + strand at 1797.628 kb on - strand at 1797.628 kb on - strand at 1797.677 kb on + strand at 1797.689 kb on - strand at 1797.689 kb on - strand at 1797.753 kb on + strand at 1797.761 kb on - strand at 1797.761 kb on - strand at 1799.513 kb on + strand at 1799.530 kb on + strand at 1799.530 kb on + strand at 1799.540 kb on + strand at 1799.587 kb on - strand at 1799.590 kb on + strand at 1799.632 kb on + strand at 1800.431 kb on + strand, within CCNA_01676 at 1800.479 kb on + strand, within CCNA_01676
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 1,796,742 + CCNA_01674 0.51 -1.0 1,796,750 - CCNA_01674 0.52 -0.9 1,796,750 - CCNA_01674 0.52 +1.1 1,796,805 + CCNA_01674 0.55 -0.7 1,796,805 + CCNA_01674 0.55 -1.3 1,796,813 - CCNA_01674 0.56 +0.5 1,796,830 + CCNA_01674 0.57 -0.5 1,796,902 - CCNA_01674 0.62 +1.3 1,796,904 + CCNA_01674 0.62 +0.2 1,796,979 + CCNA_01674 0.67 +0.4 1,796,991 + CCNA_01674 0.68 -1.3 1,796,999 - CCNA_01674 0.68 -1.8 1,797,022 + CCNA_01674 0.70 +0.5 1,797,022 + CCNA_01674 0.70 -1.7 1,797,023 + CCNA_01674 0.70 -1.3 1,797,030 - CCNA_01674 0.70 -0.6 1,797,065 + CCNA_01674 0.73 +1.2 1,797,080 + CCNA_01674 0.74 +0.5 1,797,159 - CCNA_01674 0.79 -0.5 1,797,166 + CCNA_01674 0.79 +1.0 1,797,174 - CCNA_01674 0.80 +0.1 1,797,174 - CCNA_01674 0.80 +0.6 1,797,174 - CCNA_01674 0.80 -0.4 1,797,249 + CCNA_01674 0.85 +0.7 1,797,257 + CCNA_01674 0.85 +1.2 1,797,265 + CCNA_01674 0.86 +0.1 1,797,279 - CCNA_01674 0.87 +0.7 1,797,281 + CCNA_01674 0.87 -0.8 1,797,348 + +1.1 1,797,443 + -1.5 1,797,444 + -1.3 1,797,445 + -1.6 1,797,459 - -1.5 1,797,462 + +0.2 1,797,462 + -1.5 1,797,516 + -1.3 1,797,516 + -0.6 1,797,516 + +1.7 1,797,516 + -1.4 1,797,516 + -0.9 1,797,523 + -0.3 1,797,523 + +2.7 1,797,524 - -2.7 1,797,524 - -2.0 1,797,524 - +0.9 1,797,524 - +0.9 1,797,524 - +0.5 1,797,524 - -2.2 1,797,524 - +0.4 1,797,531 - -0.9 1,797,531 - -1.0 1,797,539 + -1.1 1,797,540 + +0.7 1,797,547 - -1.5 1,797,620 + -1.1 1,797,628 - -1.2 1,797,628 - +0.1 1,797,677 + +2.8 1,797,689 - -1.4 1,797,689 - +0.1 1,797,753 + -1.6 1,797,761 - -1.6 1,797,761 - -1.3 1,799,513 + +1.3 1,799,530 + -1.7 1,799,530 + +0.7 1,799,540 + -2.3 1,799,587 - -1.5 1,799,590 + -0.4 1,799,632 + +1.1 1,800,431 + CCNA_01676 0.20 -0.3 1,800,479 + CCNA_01676 0.22 +0.2
Or see this region's nucleotide sequence