Strain Fitness in Caulobacter crescentus NA1000

Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01071

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Beta-Lactose (C)
				remove
1,176,330	+			-0.0
1,176,359	+			+1.2
1,176,393	-			+0.8
1,176,470	+			+0.3
1,176,470	+			+1.0
1,176,475	+			-0.2
1,176,500	-			+1.2
1,176,509	-			+1.2
1,176,511	+			-0.4
1,176,539	+			+0.6
1,176,544	+			-0.7
1,176,544	+			-0.4
1,176,544	+			-0.6
1,176,544	+			-2.8
1,176,544	+			+2.3
1,176,549	+			-1.7
1,176,549	+			+0.7
1,176,549	+			+0.1
1,176,552	-			+0.4
1,176,552	-			+0.5
1,176,552	-			+1.3
1,176,552	-			+1.4
1,176,552	-			+1.1
1,176,552	-			+1.6
1,176,557	-			-1.2
1,176,557	-			+0.5
1,176,557	-			+1.4
1,176,557	-			+1.4
1,176,557	-			+1.5
1,176,557	-			+1.1
1,176,557	-			+1.2
1,176,588	+	CCNA_01070	0.11	-0.9
1,176,594	-	CCNA_01070	0.11	+1.3
1,176,606	+	CCNA_01070	0.13	+1.0
1,176,614	-	CCNA_01070	0.14	+0.5
1,176,651	-	CCNA_01070	0.19	+2.3
1,176,656	-	CCNA_01070	0.20	+0.2
1,176,733	-	CCNA_01070	0.30	+1.2
1,176,740	-	CCNA_01070	0.31	+0.4
1,176,760	+	CCNA_01070	0.34	-0.0
1,176,768	-	CCNA_01070	0.35	+2.2
1,176,793	+	CCNA_01070	0.38	+0.6
1,176,796	-	CCNA_01070	0.38	+1.3
1,176,817	+	CCNA_01070	0.41	+0.2
1,176,866	+	CCNA_01070	0.48	-3.2
1,176,892	+	CCNA_01070	0.51	-0.9
1,176,911	+	CCNA_01070	0.54	-1.2
1,176,944	+	CCNA_01070	0.58	-1.2
1,176,952	-	CCNA_01070	0.59	+2.0
1,176,952	-	CCNA_01070	0.59	+1.7
1,176,952	-	CCNA_01070	0.59	+0.3
1,176,952	-	CCNA_01070	0.59	-0.1
1,176,952	-	CCNA_01070	0.59	+0.3
1,176,957	-	CCNA_01070	0.60	+1.7
1,176,965	-	CCNA_01070	0.61	+1.0
1,176,972	-	CCNA_01070	0.62	+0.4
1,176,976	+	CCNA_01070	0.62	-2.1
1,176,982	-	CCNA_01070	0.63	+0.7
1,176,992	+	CCNA_01070	0.65	-1.4
1,177,022	+	CCNA_01070	0.69	-1.1
1,177,040	-	CCNA_01070	0.71	+1.3
1,177,085	-	CCNA_01070	0.77	+2.6
1,177,100	+	CCNA_01070	0.79	+0.4
1,177,150	+	CCNA_01070	0.86	-1.8
1,177,156	+	CCNA_01070	0.86	-0.8
1,177,162	-	CCNA_01070	0.87	+0.4
1,177,209	-			-0.6
1,177,259	+			+0.2
1,177,264	+			-0.6
1,177,264	+			-1.5
1,177,265	+			-2.0
1,177,265	+			-0.0
1,177,272	-			-1.2
1,177,272	-			-0.7
1,177,272	-			+0.8
1,177,272	-			-0.7
1,177,272	-			+0.2
1,177,272	-			+1.0
1,177,272	-			-0.8
1,177,273	-			+1.8
1,177,296	+			-1.2
1,177,304	-			+0.1
1,177,316	+			-0.5
1,177,353	+			-1.8
1,177,353	+			-0.0
1,177,353	+			-0.7
1,177,353	+			-1.0
1,177,353	+			-1.4
1,177,353	+			-1.7
1,177,358	+			-0.4
1,177,361	-			+2.2
1,177,361	-			-1.5
1,177,361	-			-1.7
1,177,361	-			+0.9
1,177,361	-			+0.4
1,177,361	-			-0.7
1,177,447	+	CCNA_01071	0.10	-1.8
1,177,455	-	CCNA_01071	0.11	+0.5
1,177,471	+	CCNA_01071	0.12	-1.3
1,177,476	+	CCNA_01071	0.12	+1.0
1,177,476	+	CCNA_01071	0.12	+1.9
1,177,476	+	CCNA_01071	0.12	+1.6
1,177,477	-	CCNA_01071	0.12	-0.3
1,177,479	-	CCNA_01071	0.13	-1.4
1,177,479	-	CCNA_01071	0.13	+0.1
1,177,479	-	CCNA_01071	0.13	-1.6
1,177,484	-			+2.2
1,177,484	-	CCNA_01071	0.13	-0.9
1,177,484	-	CCNA_01071	0.13	+0.5
1,177,484	-	CCNA_01071	0.13	-0.1
1,177,508	-	CCNA_01071	0.15	-1.4
1,177,524	-	CCNA_01071	0.16	-1.7
1,177,546	+	CCNA_01071	0.17	-1.8
1,177,546	+	CCNA_01071	0.17	+0.6
1,177,546	+	CCNA_01071	0.17	-1.2
1,177,546	+	CCNA_01071	0.17	-1.0
1,177,578	+	CCNA_01071	0.19	-0.8
1,177,583	+	CCNA_01071	0.20	-0.5
1,177,586	-	CCNA_01071	0.20	-0.2
1,177,589	+	CCNA_01071	0.20	-0.3
1,177,591	-	CCNA_01071	0.20	+1.5
1,177,592	-	CCNA_01071	0.20	-0.1
1,177,641	+	CCNA_01071	0.24	+0.1
1,177,685	+	CCNA_01071	0.27	+2.3
1,177,694	-	CCNA_01071	0.28	+0.2
1,177,729	-	CCNA_01071	0.30	-2.0
1,177,742	+	CCNA_01071	0.31	-1.8
1,177,772	-	CCNA_01071	0.33	-0.8
1,177,776	+	CCNA_01071	0.33	+2.8
1,177,794	+	CCNA_01071	0.35	-2.3
1,177,797	-	CCNA_01071	0.35	+0.3
1,177,797	-	CCNA_01071	0.35	-0.0
1,177,797	-	CCNA_01071	0.35	-0.9
1,177,826	+	CCNA_01071	0.37	+1.9
1,177,826	-	CCNA_01071	0.37	+1.0
1,177,865	+	CCNA_01071	0.39	-2.0
1,177,949	-	CCNA_01071	0.45	-0.7
1,177,955	-	CCNA_01071	0.46	-0.9
1,177,960	-	CCNA_01071	0.46	+0.5
1,177,960	-	CCNA_01071	0.46	+0.9
1,177,965	-	CCNA_01071	0.46	+1.5
1,177,965	-	CCNA_01071	0.46	-0.9
1,177,965	-	CCNA_01071	0.46	-0.4
1,177,965	-	CCNA_01071	0.46	-1.3
1,178,034	-	CCNA_01071	0.51	-0.0
1,178,037	-	CCNA_01071	0.51	-0.1
1,178,039	-	CCNA_01071	0.52	-0.1
1,178,053	+	CCNA_01071	0.53	-2.2
1,178,090	+	CCNA_01071	0.55	-0.8
1,178,090	+	CCNA_01071	0.55	-0.4
1,178,096	-	CCNA_01071	0.56	-0.4
1,178,096	-	CCNA_01071	0.56	-1.7
1,178,096	-	CCNA_01071	0.56	-1.5
1,178,098	-	CCNA_01071	0.56	+1.4
1,178,098	-	CCNA_01071	0.56	+0.2
1,178,098	-	CCNA_01071	0.56	-1.5
1,178,098	-	CCNA_01071	0.56	+0.0
1,178,124	+	CCNA_01071	0.58	-1.2
1,178,124	+	CCNA_01071	0.58	+0.2
1,178,205	+	CCNA_01071	0.63	-2.4
1,178,243	+	CCNA_01071	0.66	+0.5
1,178,264	+	CCNA_01071	0.67	-0.3
1,178,308	-	CCNA_01071	0.70	-0.2
1,178,309	-	CCNA_01071	0.70	-0.4
1,178,309	-	CCNA_01071	0.70	-0.3
1,178,309	-	CCNA_01071	0.70	+0.4
1,178,309	-	CCNA_01071	0.70	-0.2
1,178,309	-	CCNA_01071	0.70	-0.5
1,178,330	-	CCNA_01071	0.72	-0.2
1,178,351	-			+2.8
1,178,364	+	CCNA_01071	0.74	+1.4
1,178,372	-	CCNA_01071	0.75	-0.5
1,178,395	+	CCNA_01071	0.76	+0.2
1,178,395	-	CCNA_01071	0.76	+0.2
1,178,434	+	CCNA_01071	0.79	-1.0
1,178,442	-	CCNA_01071	0.80	+0.5
1,178,465	-	CCNA_01071	0.81	-0.3
1,178,488	+	CCNA_01071	0.83	-2.1
1,178,495	+	CCNA_01071	0.83	-1.4
1,178,496	-	CCNA_01071	0.83	-0.0
1,178,589	-			-0.6
1,178,602	+			-0.8
1,178,621	-			+0.3
1,178,670	+			-2.0
1,178,675	+			-0.2
1,178,678	-			+0.1
1,178,678	-			+0.4
1,178,681	+			+0.6
1,178,691	+			-1.7
1,178,699	-			-0.2
1,178,880	-			-0.0
1,178,893	+			-0.0
1,178,896	-			+0.7
1,178,901	-			+0.2
1,178,903	+			-1.1
1,178,931	-	CCNA_01072	0.16	+0.2
1,178,941	-	CCNA_01072	0.22	+1.3
1,178,948	+	CCNA_01072	0.27	-1.5
1,178,953	+	CCNA_01072	0.30	+0.6
1,178,956	-	CCNA_01072	0.32	-1.4
1,178,956	-	CCNA_01072	0.32	+0.2
1,178,956	-	CCNA_01072	0.32	-1.6
1,178,956	-	CCNA_01072	0.32	+0.3
1,178,956	-	CCNA_01072	0.32	+0.9
1,178,956	-	CCNA_01072	0.32	+1.4
1,178,961	-	CCNA_01072	0.35	+0.1
1,178,981	-	CCNA_01072	0.48	-0.5
1,178,998	-	CCNA_01072	0.59	+0.1
1,179,003	-	CCNA_01072	0.62	+1.8
1,179,025	-	CCNA_01072	0.76	+0.4
1,179,030	-	CCNA_01072	0.79	+0.5
1,179,063	+			-1.4
1,179,063	+			-1.7
1,179,063	+			+1.2
1,179,071	-			+0.4
1,179,071	-			+0.2
1,179,088	-			-0.1
1,179,109	+			-0.5
1,179,110	+			-1.7
1,179,117	-			-0.5
1,179,139	+			-0.5
1,179,171	-			+2.4
1,179,173	-			-1.1
1,179,177	+			+0.2
1,179,185	-			-0.7
1,179,185	-			-1.3
1,179,211	+	CCNA_01073	0.12	-2.5
1,179,211	+	CCNA_01073	0.12	-1.8
1,179,219	-	CCNA_01073	0.14	-0.5
1,179,219	-	CCNA_01073	0.14	-0.7
1,179,219	-	CCNA_01073	0.14	-1.1
1,179,219	-	CCNA_01073	0.14	+0.6
1,179,219	-	CCNA_01073	0.14	+0.9
1,179,226	+	CCNA_01073	0.16	-0.7
1,179,226	+	CCNA_01073	0.16	-0.1
1,179,226	+	CCNA_01073	0.16	+1.1
1,179,242	+	CCNA_01073	0.20	-1.4
1,179,251	-	CCNA_01073	0.22	-0.8
1,179,251	-	CCNA_01073	0.22	+1.1
1,179,251	-	CCNA_01073	0.22	+0.9
1,179,252	+	CCNA_01073	0.22	-2.0
1,179,252	+	CCNA_01073	0.22	-1.4
1,179,277	-	CCNA_01073	0.28	+1.2
1,179,340	+	CCNA_01073	0.45	-1.2
1,179,348	-	CCNA_01073	0.47	+1.4
1,179,409	-	CCNA_01073	0.62	+0.7
1,179,448	-	CCNA_01073	0.72	+0.8
1,179,448	-	CCNA_01073	0.72	+0.5
1,179,448	-	CCNA_01073	0.72	+0.5
1,179,448	-	CCNA_01073	0.72	-0.1
1,179,448	-	CCNA_01073	0.72	-0.4
1,179,459	+	CCNA_01073	0.75	-1.7
1,179,504	+	CCNA_01073	0.86	-0.2
1,179,510	-	CCNA_01073	0.88	+2.1
1,179,512	-	CCNA_01073	0.88	+2.0
1,179,531	+			-0.3
1,179,531	+			-1.6
1,179,539	-			+1.6
1,179,608	+			+0.1
1,179,612	-			+1.6
1,179,614	+			-2.2
1,179,615	+			+0.3
1,179,622	+			+0.5
1,179,622	-			+0.0
1,179,622	-			+1.2
1,179,623	-			+1.1
1,179,644	+	CCNA_01074	0.20	-0.5
1,179,685	-	CCNA_01074	0.49	+2.0

Or see this region's nucleotide sequence