Experiment: R2A with Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00935 and CA265_RS00940 are separated by 563 nucleotides CA265_RS00940 and CA265_RS00945 overlap by 38 nucleotides CA265_RS00945 and CA265_RS00950 are separated by 26 nucleotides
CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644
_RS00935
CA265_RS00940: CA265_RS00940 - hypothetical protein, at 235,208 to 235,444
_RS00940
CA265_RS00945: CA265_RS00945 - SusC/RagA family TonB-linked outer membrane protein, at 235,407 to 238,538
_RS00945
CA265_RS00950: CA265_RS00950 - RagB/SusD family nutrient uptake outer membrane protein, at 238,565 to 240,121
_RS00950
Position (kb) 235
236
237
238
239 Strain fitness (log2 ratio) -1
0
1
2 at 234.431 kb on - strand, within CA265_RS00935 at 234.470 kb on + strand, within CA265_RS00935 at 234.559 kb on + strand at 234.559 kb on + strand at 234.560 kb on - strand at 234.560 kb on - strand at 234.642 kb on + strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.815 kb on - strand at 234.888 kb on + strand at 235.045 kb on + strand at 235.124 kb on - strand at 235.134 kb on - strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.237 kb on + strand, within CA265_RS00940 at 235.238 kb on - strand, within CA265_RS00940 at 235.258 kb on + strand, within CA265_RS00940 at 235.302 kb on - strand, within CA265_RS00940 at 235.303 kb on + strand, within CA265_RS00940 at 235.304 kb on - strand, within CA265_RS00940 at 235.391 kb on + strand, within CA265_RS00940 at 235.452 kb on - strand at 235.567 kb on + strand at 235.676 kb on + strand at 235.723 kb on + strand, within CA265_RS00945 at 235.916 kb on + strand, within CA265_RS00945 at 235.947 kb on + strand, within CA265_RS00945 at 235.954 kb on + strand, within CA265_RS00945 at 236.071 kb on + strand, within CA265_RS00945 at 236.073 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.149 kb on - strand, within CA265_RS00945 at 236.215 kb on - strand, within CA265_RS00945 at 236.295 kb on - strand, within CA265_RS00945 at 236.295 kb on - strand, within CA265_RS00945 at 236.326 kb on + strand, within CA265_RS00945 at 236.326 kb on + strand, within CA265_RS00945 at 236.361 kb on + strand, within CA265_RS00945 at 236.362 kb on - strand, within CA265_RS00945 at 236.362 kb on - strand, within CA265_RS00945 at 236.363 kb on + strand, within CA265_RS00945 at 236.445 kb on - strand, within CA265_RS00945 at 236.502 kb on + strand, within CA265_RS00945 at 236.502 kb on + strand, within CA265_RS00945 at 236.627 kb on - strand, within CA265_RS00945 at 236.703 kb on - strand, within CA265_RS00945 at 236.799 kb on + strand, within CA265_RS00945 at 236.800 kb on - strand, within CA265_RS00945 at 236.811 kb on - strand, within CA265_RS00945 at 236.816 kb on + strand, within CA265_RS00945 at 236.817 kb on - strand, within CA265_RS00945 at 236.860 kb on + strand, within CA265_RS00945 at 236.868 kb on - strand, within CA265_RS00945 at 236.897 kb on - strand, within CA265_RS00945 at 236.899 kb on - strand, within CA265_RS00945 at 236.905 kb on + strand, within CA265_RS00945 at 236.973 kb on + strand, within CA265_RS00945 at 236.982 kb on + strand, within CA265_RS00945 at 237.022 kb on + strand at 237.022 kb on + strand, within CA265_RS00945 at 237.062 kb on + strand, within CA265_RS00945 at 237.192 kb on + strand, within CA265_RS00945 at 237.193 kb on - strand, within CA265_RS00945 at 237.201 kb on - strand, within CA265_RS00945 at 237.201 kb on - strand, within CA265_RS00945 at 237.211 kb on - strand, within CA265_RS00945 at 237.211 kb on - strand, within CA265_RS00945 at 237.267 kb on - strand, within CA265_RS00945 at 237.359 kb on - strand, within CA265_RS00945 at 237.429 kb on - strand, within CA265_RS00945 at 237.453 kb on - strand, within CA265_RS00945 at 237.580 kb on - strand, within CA265_RS00945 at 237.600 kb on - strand, within CA265_RS00945 at 237.600 kb on - strand, within CA265_RS00945 at 237.620 kb on - strand, within CA265_RS00945 at 237.644 kb on - strand, within CA265_RS00945 at 237.644 kb on - strand, within CA265_RS00945 at 237.744 kb on - strand, within CA265_RS00945 at 237.765 kb on - strand, within CA265_RS00945 at 237.765 kb on - strand, within CA265_RS00945 at 237.847 kb on + strand, within CA265_RS00945 at 237.927 kb on + strand, within CA265_RS00945 at 237.928 kb on - strand, within CA265_RS00945 at 237.928 kb on - strand, within CA265_RS00945 at 237.928 kb on - strand, within CA265_RS00945 at 237.931 kb on + strand, within CA265_RS00945 at 237.931 kb on + strand, within CA265_RS00945 at 237.932 kb on - strand, within CA265_RS00945 at 237.932 kb on - strand, within CA265_RS00945 at 237.932 kb on - strand, within CA265_RS00945 at 237.975 kb on + strand, within CA265_RS00945 at 237.976 kb on - strand, within CA265_RS00945 at 237.976 kb on - strand, within CA265_RS00945 at 238.004 kb on + strand, within CA265_RS00945 at 238.004 kb on + strand, within CA265_RS00945 at 238.110 kb on + strand, within CA265_RS00945 at 238.117 kb on - strand, within CA265_RS00945 at 238.122 kb on - strand, within CA265_RS00945 at 238.168 kb on + strand, within CA265_RS00945 at 238.168 kb on + strand, within CA265_RS00945 at 238.168 kb on + strand, within CA265_RS00945 at 238.169 kb on - strand, within CA265_RS00945 at 238.193 kb on - strand, within CA265_RS00945 at 238.193 kb on - strand, within CA265_RS00945 at 238.264 kb on + strand at 238.264 kb on + strand at 238.264 kb on + strand at 238.265 kb on - strand at 238.369 kb on + strand at 238.423 kb on - strand at 238.517 kb on - strand at 238.536 kb on + strand at 238.537 kb on - strand at 238.572 kb on + strand at 238.636 kb on + strand at 238.809 kb on + strand, within CA265_RS00950 at 238.888 kb on + strand, within CA265_RS00950 at 238.917 kb on + strand, within CA265_RS00950 at 238.917 kb on + strand, within CA265_RS00950 at 238.917 kb on + strand, within CA265_RS00950 at 238.918 kb on - strand, within CA265_RS00950 at 239.080 kb on + strand, within CA265_RS00950 at 239.090 kb on - strand, within CA265_RS00950 at 239.246 kb on + strand, within CA265_RS00950 at 239.250 kb on + strand, within CA265_RS00950 at 239.250 kb on + strand, within CA265_RS00950 at 239.251 kb on - strand, within CA265_RS00950 at 239.251 kb on - strand, within CA265_RS00950 at 239.251 kb on - strand, within CA265_RS00950 at 239.251 kb on - strand, within CA265_RS00950 at 239.272 kb on + strand, within CA265_RS00950 at 239.273 kb on - strand, within CA265_RS00950 at 239.288 kb on + strand, within CA265_RS00950 at 239.288 kb on + strand, within CA265_RS00950 at 239.331 kb on - strand, within CA265_RS00950 at 239.352 kb on + strand, within CA265_RS00950 at 239.404 kb on + strand, within CA265_RS00950
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.01 mg/ml remove 234,431 - CA265_RS00935 0.81 +0.3 234,470 + CA265_RS00935 0.85 -0.3 234,559 + +0.3 234,559 + -0.5 234,560 - -0.5 234,560 - -0.2 234,642 + -0.1 234,660 - +0.2 234,660 - -0.7 234,660 - +0.4 234,815 - +0.1 234,888 + +0.7 235,045 + +0.5 235,124 - -0.2 235,134 - -0.5 235,135 + -0.4 235,135 + -0.0 235,135 + -0.0 235,237 + CA265_RS00940 0.12 +0.6 235,238 - CA265_RS00940 0.13 -0.1 235,258 + CA265_RS00940 0.21 -0.4 235,302 - CA265_RS00940 0.40 +0.1 235,303 + CA265_RS00940 0.40 +0.8 235,304 - CA265_RS00940 0.41 +1.4 235,391 + CA265_RS00940 0.77 +1.9 235,452 - +0.1 235,567 + -0.7 235,676 + -1.0 235,723 + CA265_RS00945 0.10 -0.8 235,916 + CA265_RS00945 0.16 -0.8 235,947 + CA265_RS00945 0.17 +0.1 235,954 + CA265_RS00945 0.17 -0.4 236,071 + CA265_RS00945 0.21 -0.4 236,073 + CA265_RS00945 0.21 -0.3 236,148 + CA265_RS00945 0.24 -0.2 236,148 + CA265_RS00945 0.24 +0.4 236,148 + CA265_RS00945 0.24 +1.0 236,149 - CA265_RS00945 0.24 -0.9 236,215 - CA265_RS00945 0.26 -0.0 236,295 - CA265_RS00945 0.28 -1.7 236,295 - CA265_RS00945 0.28 +0.1 236,326 + CA265_RS00945 0.29 +0.2 236,326 + CA265_RS00945 0.29 -0.7 236,361 + CA265_RS00945 0.30 +0.0 236,362 - CA265_RS00945 0.30 -1.3 236,362 - CA265_RS00945 0.30 +0.4 236,363 + CA265_RS00945 0.31 -0.0 236,445 - CA265_RS00945 0.33 +0.5 236,502 + CA265_RS00945 0.35 +0.8 236,502 + CA265_RS00945 0.35 +0.2 236,627 - CA265_RS00945 0.39 -0.5 236,703 - CA265_RS00945 0.41 -0.8 236,799 + CA265_RS00945 0.44 +0.0 236,800 - CA265_RS00945 0.44 -0.3 236,811 - CA265_RS00945 0.45 -1.7 236,816 + CA265_RS00945 0.45 -0.5 236,817 - CA265_RS00945 0.45 -1.0 236,860 + CA265_RS00945 0.46 +0.2 236,868 - CA265_RS00945 0.47 -0.4 236,897 - CA265_RS00945 0.48 -1.0 236,899 - CA265_RS00945 0.48 -0.8 236,905 + CA265_RS00945 0.48 -0.4 236,973 + CA265_RS00945 0.50 -0.3 236,982 + CA265_RS00945 0.50 -1.3 237,022 + -0.0 237,022 + CA265_RS00945 0.52 +2.0 237,062 + CA265_RS00945 0.53 +0.8 237,192 + CA265_RS00945 0.57 -0.3 237,193 - CA265_RS00945 0.57 -0.2 237,201 - CA265_RS00945 0.57 -0.9 237,201 - CA265_RS00945 0.57 -0.5 237,211 - CA265_RS00945 0.58 +0.3 237,211 - CA265_RS00945 0.58 +0.1 237,267 - CA265_RS00945 0.59 -0.0 237,359 - CA265_RS00945 0.62 +1.2 237,429 - CA265_RS00945 0.65 -0.6 237,453 - CA265_RS00945 0.65 -0.1 237,580 - CA265_RS00945 0.69 +0.2 237,600 - CA265_RS00945 0.70 +0.5 237,600 - CA265_RS00945 0.70 +0.1 237,620 - CA265_RS00945 0.71 -0.0 237,644 - CA265_RS00945 0.71 +0.2 237,644 - CA265_RS00945 0.71 +0.3 237,744 - CA265_RS00945 0.75 -0.2 237,765 - CA265_RS00945 0.75 -0.1 237,765 - CA265_RS00945 0.75 +0.3 237,847 + CA265_RS00945 0.78 -1.1 237,927 + CA265_RS00945 0.80 -0.2 237,928 - CA265_RS00945 0.80 +0.0 237,928 - CA265_RS00945 0.80 -0.3 237,928 - CA265_RS00945 0.80 -0.7 237,931 + CA265_RS00945 0.81 -0.3 237,931 + CA265_RS00945 0.81 -0.3 237,932 - CA265_RS00945 0.81 -0.0 237,932 - CA265_RS00945 0.81 +0.1 237,932 - CA265_RS00945 0.81 +0.8 237,975 + CA265_RS00945 0.82 +0.1 237,976 - CA265_RS00945 0.82 -1.0 237,976 - CA265_RS00945 0.82 -0.4 238,004 + CA265_RS00945 0.83 -0.5 238,004 + CA265_RS00945 0.83 -0.5 238,110 + CA265_RS00945 0.86 -0.7 238,117 - CA265_RS00945 0.87 +0.8 238,122 - CA265_RS00945 0.87 -0.6 238,168 + CA265_RS00945 0.88 -1.1 238,168 + CA265_RS00945 0.88 -1.5 238,168 + CA265_RS00945 0.88 -1.2 238,169 - CA265_RS00945 0.88 +0.0 238,193 - CA265_RS00945 0.89 +0.5 238,193 - CA265_RS00945 0.89 -0.9 238,264 + -1.1 238,264 + +0.1 238,264 + +0.2 238,265 - -0.8 238,369 + +0.1 238,423 - +0.8 238,517 - +0.0 238,536 + +0.5 238,537 - -0.7 238,572 + +0.2 238,636 + -0.5 238,809 + CA265_RS00950 0.16 +0.3 238,888 + CA265_RS00950 0.21 +1.2 238,917 + CA265_RS00950 0.23 -0.0 238,917 + CA265_RS00950 0.23 +2.5 238,917 + CA265_RS00950 0.23 -0.6 238,918 - CA265_RS00950 0.23 -0.2 239,080 + CA265_RS00950 0.33 -0.4 239,090 - CA265_RS00950 0.34 +0.9 239,246 + CA265_RS00950 0.44 -0.3 239,250 + CA265_RS00950 0.44 -0.0 239,250 + CA265_RS00950 0.44 -1.1 239,251 - CA265_RS00950 0.44 -0.3 239,251 - CA265_RS00950 0.44 +0.5 239,251 - CA265_RS00950 0.44 -0.1 239,251 - CA265_RS00950 0.44 +0.0 239,272 + CA265_RS00950 0.45 +0.1 239,273 - CA265_RS00950 0.45 +0.5 239,288 + CA265_RS00950 0.46 +0.5 239,288 + CA265_RS00950 0.46 +0.4 239,331 - CA265_RS00950 0.49 -0.6 239,352 + CA265_RS00950 0.51 +0.1 239,404 + CA265_RS00950 0.54 +0.6
Or see this region's nucleotide sequence