Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3983

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3980 and Ac3H11_3981 overlap by 4 nucleotidesAc3H11_3981 and Ac3H11_3982 are separated by 9 nucleotidesAc3H11_3982 and Ac3H11_3983 overlap by 6 nucleotidesAc3H11_3983 and Ac3H11_3984 are separated by 42 nucleotides Ac3H11_3980 - Putative Holliday junction resolvase YqgF, at 211,527 to 211,958 _3980 Ac3H11_3981 - UPF0301 protein YqgE, at 211,955 to 212,554 _3981 Ac3H11_3982 - hypothetical protein, at 212,564 to 212,710 _3982 Ac3H11_3983 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 212,705 to 214,078 _3983 Ac3H11_3984 - Twitching motility protein PilT, at 214,121 to 215,299 _3984 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2 3at 212.131 kb on - strand, within Ac3H11_3981at 212.131 kb on - strand, within Ac3H11_3981at 212.242 kb on - strand, within Ac3H11_3981at 212.242 kb on - strand, within Ac3H11_3981at 212.242 kb on - strand, within Ac3H11_3981at 212.618 kb on + strand, within Ac3H11_3982at 212.618 kb on + strand, within Ac3H11_3982at 212.618 kb on + strand, within Ac3H11_3982at 212.618 kb on + strand, within Ac3H11_3982at 212.619 kb on - strand, within Ac3H11_3982at 212.619 kb on - strand, within Ac3H11_3982at 212.619 kb on - strand, within Ac3H11_3982at 212.678 kb on + strand, within Ac3H11_3982at 212.678 kb on + strand, within Ac3H11_3982at 213.062 kb on + strand, within Ac3H11_3983at 213.062 kb on + strand, within Ac3H11_3983at 213.062 kb on + strand, within Ac3H11_3983at 213.063 kb on - strand, within Ac3H11_3983at 213.080 kb on + strand, within Ac3H11_3983at 213.080 kb on + strand, within Ac3H11_3983at 213.080 kb on + strand, within Ac3H11_3983at 213.080 kb on + strand, within Ac3H11_3983at 213.080 kb on + strand, within Ac3H11_3983at 213.080 kb on + strand, within Ac3H11_3983at 213.129 kb on - strand, within Ac3H11_3983at 213.306 kb on - strand, within Ac3H11_3983at 213.347 kb on + strand, within Ac3H11_3983at 213.347 kb on + strand, within Ac3H11_3983at 213.347 kb on + strand, within Ac3H11_3983at 213.347 kb on + strand, within Ac3H11_3983at 213.477 kb on - strand, within Ac3H11_3983at 213.653 kb on + strand, within Ac3H11_3983at 213.653 kb on + strand, within Ac3H11_3983at 213.654 kb on - strand, within Ac3H11_3983at 213.654 kb on - strand, within Ac3H11_3983at 213.654 kb on - strand, within Ac3H11_3983at 213.734 kb on + strand, within Ac3H11_3983at 213.734 kb on + strand, within Ac3H11_3983at 213.735 kb on - strand, within Ac3H11_3983at 213.735 kb on - strand, within Ac3H11_3983at 213.735 kb on - strand, within Ac3H11_3983at 213.735 kb on - strand, within Ac3H11_3983at 213.824 kb on + strand, within Ac3H11_3983at 213.825 kb on - strand, within Ac3H11_3983at 213.825 kb on - strand, within Ac3H11_3983at 213.894 kb on - strand, within Ac3H11_3983at 213.894 kb on - strand, within Ac3H11_3983at 213.995 kb on + strandat 213.995 kb on + strandat 213.995 kb on + strandat 213.996 kb on - strandat 213.996 kb on - strandat 213.996 kb on - strandat 213.996 kb on - strandat 214.049 kb on + strandat 214.049 kb on + strandat 214.049 kb on + strandat 214.050 kb on - strandat 214.050 kb on - strandat 214.076 kb on + strandat 214.122 kb on + strandat 214.123 kb on - strandat 214.256 kb on + strand, within Ac3H11_3984at 214.398 kb on + strand, within Ac3H11_3984at 214.398 kb on + strand, within Ac3H11_3984at 214.398 kb on + strand, within Ac3H11_3984at 214.398 kb on + strand, within Ac3H11_3984at 214.398 kb on + strand, within Ac3H11_3984at 214.398 kb on + strand, within Ac3H11_3984at 214.399 kb on - strand, within Ac3H11_3984at 214.505 kb on + strand, within Ac3H11_3984at 214.506 kb on - strand, within Ac3H11_3984at 214.506 kb on - strand, within Ac3H11_3984at 214.506 kb on - strand, within Ac3H11_3984at 214.506 kb on - strand, within Ac3H11_3984at 214.506 kb on - strand, within Ac3H11_3984at 214.611 kb on + strand, within Ac3H11_3984at 214.611 kb on + strand, within Ac3H11_3984at 214.611 kb on + strand, within Ac3H11_3984at 214.612 kb on - strand, within Ac3H11_3984at 214.612 kb on - strand, within Ac3H11_3984at 214.612 kb on - strand, within Ac3H11_3984at 214.707 kb on + strand, within Ac3H11_3984at 214.717 kb on + strand, within Ac3H11_3984at 214.718 kb on - strand, within Ac3H11_3984at 214.718 kb on - strand, within Ac3H11_3984at 214.770 kb on + strand, within Ac3H11_3984at 214.770 kb on + strand, within Ac3H11_3984at 214.798 kb on + strand, within Ac3H11_3984at 214.798 kb on + strand, within Ac3H11_3984at 214.799 kb on - strand, within Ac3H11_3984at 214.953 kb on - strand, within Ac3H11_3984at 214.973 kb on + strand, within Ac3H11_3984

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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212,131 - Ac3H11_3981 0.29 +0.9
212,131 - Ac3H11_3981 0.29 +0.5
212,242 - Ac3H11_3981 0.48 -0.3
212,242 - Ac3H11_3981 0.48 -1.1
212,242 - Ac3H11_3981 0.48 -0.2
212,618 + Ac3H11_3982 0.37 +1.0
212,618 + Ac3H11_3982 0.37 +0.3
212,618 + Ac3H11_3982 0.37 -0.4
212,618 + Ac3H11_3982 0.37 +0.3
212,619 - Ac3H11_3982 0.37 -0.6
212,619 - Ac3H11_3982 0.37 -0.5
212,619 - Ac3H11_3982 0.37 -0.5
212,678 + Ac3H11_3982 0.78 +0.1
212,678 + Ac3H11_3982 0.78 -1.8
213,062 + Ac3H11_3983 0.26 +3.0
213,062 + Ac3H11_3983 0.26 -0.4
213,062 + Ac3H11_3983 0.26 -0.2
213,063 - Ac3H11_3983 0.26 +0.4
213,080 + Ac3H11_3983 0.27 -0.5
213,080 + Ac3H11_3983 0.27 +0.9
213,080 + Ac3H11_3983 0.27 +0.6
213,080 + Ac3H11_3983 0.27 -0.2
213,080 + Ac3H11_3983 0.27 +0.4
213,080 + Ac3H11_3983 0.27 +0.9
213,129 - Ac3H11_3983 0.31 +0.4
213,306 - Ac3H11_3983 0.44 -0.9
213,347 + Ac3H11_3983 0.47 +0.4
213,347 + Ac3H11_3983 0.47 +0.6
213,347 + Ac3H11_3983 0.47 +0.9
213,347 + Ac3H11_3983 0.47 +0.4
213,477 - Ac3H11_3983 0.56 -1.0
213,653 + Ac3H11_3983 0.69 +1.0
213,653 + Ac3H11_3983 0.69 +0.6
213,654 - Ac3H11_3983 0.69 +0.4
213,654 - Ac3H11_3983 0.69 +0.8
213,654 - Ac3H11_3983 0.69 +0.7
213,734 + Ac3H11_3983 0.75 +0.5
213,734 + Ac3H11_3983 0.75 +1.0
213,735 - Ac3H11_3983 0.75 -0.9
213,735 - Ac3H11_3983 0.75 -0.5
213,735 - Ac3H11_3983 0.75 -0.1
213,735 - Ac3H11_3983 0.75 -0.2
213,824 + Ac3H11_3983 0.81 -0.0
213,825 - Ac3H11_3983 0.82 +1.1
213,825 - Ac3H11_3983 0.82 +0.7
213,894 - Ac3H11_3983 0.87 +0.6
213,894 - Ac3H11_3983 0.87 -0.8
213,995 + -0.6
213,995 + -0.0
213,995 + -0.2
213,996 - +0.2
213,996 - -0.1
213,996 - -0.3
213,996 - +0.4
214,049 + -0.8
214,049 + +1.4
214,049 + +0.1
214,050 - +0.1
214,050 - +0.1
214,076 + +0.4
214,122 + +0.5
214,123 - +0.2
214,256 + Ac3H11_3984 0.11 +0.9
214,398 + Ac3H11_3984 0.23 +0.4
214,398 + Ac3H11_3984 0.23 -0.2
214,398 + Ac3H11_3984 0.23 +0.6
214,398 + Ac3H11_3984 0.23 +0.2
214,398 + Ac3H11_3984 0.23 +1.1
214,398 + Ac3H11_3984 0.23 -0.2
214,399 - Ac3H11_3984 0.24 -0.0
214,505 + Ac3H11_3984 0.33 +0.7
214,506 - Ac3H11_3984 0.33 +0.8
214,506 - Ac3H11_3984 0.33 -0.3
214,506 - Ac3H11_3984 0.33 -0.5
214,506 - Ac3H11_3984 0.33 -0.2
214,506 - Ac3H11_3984 0.33 -1.5
214,611 + Ac3H11_3984 0.42 +0.4
214,611 + Ac3H11_3984 0.42 -1.3
214,611 + Ac3H11_3984 0.42 -0.2
214,612 - Ac3H11_3984 0.42 +0.5
214,612 - Ac3H11_3984 0.42 +1.0
214,612 - Ac3H11_3984 0.42 -1.1
214,707 + Ac3H11_3984 0.50 -0.5
214,717 + Ac3H11_3984 0.51 +0.8
214,718 - Ac3H11_3984 0.51 +0.3
214,718 - Ac3H11_3984 0.51 -1.8
214,770 + Ac3H11_3984 0.55 +0.2
214,770 + Ac3H11_3984 0.55 -2.1
214,798 + Ac3H11_3984 0.57 -0.2
214,798 + Ac3H11_3984 0.57 -0.1
214,799 - Ac3H11_3984 0.58 -0.5
214,953 - Ac3H11_3984 0.71 -1.0
214,973 + Ac3H11_3984 0.72 +0.7

Or see this region's nucleotide sequence