Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29860

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29850 and AZOBR_RS29855 overlap by 4 nucleotidesAZOBR_RS29855 and AZOBR_RS29860 are separated by 4 nucleotidesAZOBR_RS29860 and AZOBR_RS29865 are separated by 152 nucleotides AZOBR_RS29850: AZOBR_RS29850 - ketohydroxyglutarate aldolase, at 44,114 to 44,749 _RS29850 AZOBR_RS29855: AZOBR_RS29855 - GntR family transcriptional regulator, at 44,746 to 45,513 _RS29855 AZOBR_RS29860: AZOBR_RS29860 - ketodeoxygluconokinase, at 45,518 to 46,450 _RS29860 AZOBR_RS29865: AZOBR_RS29865 - DMT transporter permease, at 46,603 to 47,559 _RS29865 Position (kb) 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1at 44.774 kb on + strandat 44.774 kb on + strandat 44.774 kb on + strandat 44.775 kb on - strandat 44.775 kb on - strandat 44.775 kb on - strandat 44.775 kb on - strandat 45.474 kb on + strandat 45.475 kb on - strandat 45.475 kb on - strandat 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.056 kb on + strand, within AZOBR_RS29860at 46.057 kb on - strand, within AZOBR_RS29860at 46.057 kb on - strand, within AZOBR_RS29860at 46.057 kb on - strand, within AZOBR_RS29860at 46.057 kb on - strand, within AZOBR_RS29860at 46.057 kb on - strand, within AZOBR_RS29860at 46.068 kb on + strand, within AZOBR_RS29860at 46.068 kb on + strand, within AZOBR_RS29860at 46.146 kb on + strand, within AZOBR_RS29860at 46.147 kb on - strand, within AZOBR_RS29860at 46.188 kb on + strand, within AZOBR_RS29860at 46.188 kb on + strand, within AZOBR_RS29860at 46.188 kb on + strand, within AZOBR_RS29860at 46.188 kb on + strand, within AZOBR_RS29860at 46.189 kb on - strand, within AZOBR_RS29860at 46.303 kb on - strand, within AZOBR_RS29860at 46.313 kb on + strand, within AZOBR_RS29860at 46.314 kb on - strand, within AZOBR_RS29860at 46.314 kb on - strand, within AZOBR_RS29860at 46.330 kb on + strand, within AZOBR_RS29860at 46.332 kb on + strand, within AZOBR_RS29860at 46.332 kb on + strand, within AZOBR_RS29860at 46.332 kb on + strand, within AZOBR_RS29860at 46.332 kb on + strand, within AZOBR_RS29860at 46.333 kb on - strand, within AZOBR_RS29860at 46.333 kb on - strand, within AZOBR_RS29860at 46.333 kb on - strand, within AZOBR_RS29860at 46.333 kb on - strand, within AZOBR_RS29860at 46.517 kb on + strandat 46.667 kb on + strandat 46.667 kb on + strandat 46.667 kb on + strandat 46.668 kb on - strandat 46.668 kb on - strandat 46.772 kb on + strand, within AZOBR_RS29865at 46.772 kb on + strand, within AZOBR_RS29865at 46.772 kb on + strand, within AZOBR_RS29865at 46.772 kb on + strand, within AZOBR_RS29865at 46.772 kb on + strand, within AZOBR_RS29865at 46.773 kb on - strand, within AZOBR_RS29865at 46.773 kb on - strand, within AZOBR_RS29865at 46.773 kb on - strand, within AZOBR_RS29865at 46.773 kb on - strand, within AZOBR_RS29865at 46.773 kb on - strand, within AZOBR_RS29865at 46.811 kb on + strand, within AZOBR_RS29865at 46.812 kb on - strand, within AZOBR_RS29865at 46.930 kb on + strand, within AZOBR_RS29865at 46.930 kb on + strand, within AZOBR_RS29865at 47.189 kb on + strand, within AZOBR_RS29865at 47.189 kb on + strand, within AZOBR_RS29865at 47.190 kb on - strand, within AZOBR_RS29865at 47.190 kb on - strand, within AZOBR_RS29865at 47.190 kb on - strand, within AZOBR_RS29865at 47.190 kb on - strand, within AZOBR_RS29865at 47.190 kb on - strand, within AZOBR_RS29865at 47.222 kb on + strand, within AZOBR_RS29865at 47.222 kb on + strand, within AZOBR_RS29865at 47.223 kb on - strand, within AZOBR_RS29865at 47.363 kb on + strand, within AZOBR_RS29865at 47.363 kb on + strand, within AZOBR_RS29865at 47.363 kb on + strand, within AZOBR_RS29865at 47.363 kb on + strand, within AZOBR_RS29865at 47.364 kb on - strand, within AZOBR_RS29865at 47.364 kb on - strand, within AZOBR_RS29865at 47.408 kb on + strand, within AZOBR_RS29865at 47.408 kb on + strand, within AZOBR_RS29865at 47.408 kb on + strand, within AZOBR_RS29865at 47.408 kb on + strand, within AZOBR_RS29865at 47.409 kb on - strand, within AZOBR_RS29865

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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44,774 + -0.7
44,774 + +0.2
44,774 + -1.7
44,775 - +0.5
44,775 - -0.9
44,775 - -0.6
44,775 - -0.1
45,474 + +0.0
45,475 - +0.1
45,475 - -0.1
46,056 + AZOBR_RS29860 0.58 -1.1
46,056 + AZOBR_RS29860 0.58 -0.8
46,056 + AZOBR_RS29860 0.58 -0.3
46,056 + AZOBR_RS29860 0.58 -0.7
46,056 + AZOBR_RS29860 0.58 -0.9
46,056 + AZOBR_RS29860 0.58 +0.2
46,056 + AZOBR_RS29860 0.58 -0.9
46,056 + AZOBR_RS29860 0.58 -0.8
46,056 + AZOBR_RS29860 0.58 -0.2
46,056 + AZOBR_RS29860 0.58 -0.8
46,056 + AZOBR_RS29860 0.58 -0.9
46,057 - AZOBR_RS29860 0.58 -0.9
46,057 - AZOBR_RS29860 0.58 -1.1
46,057 - AZOBR_RS29860 0.58 -1.1
46,057 - AZOBR_RS29860 0.58 -0.7
46,057 - AZOBR_RS29860 0.58 -0.8
46,068 + AZOBR_RS29860 0.59 -0.6
46,068 + AZOBR_RS29860 0.59 -0.7
46,146 + AZOBR_RS29860 0.67 -0.9
46,147 - AZOBR_RS29860 0.67 -0.2
46,188 + AZOBR_RS29860 0.72 -1.8
46,188 + AZOBR_RS29860 0.72 -0.8
46,188 + AZOBR_RS29860 0.72 -0.3
46,188 + AZOBR_RS29860 0.72 -0.2
46,189 - AZOBR_RS29860 0.72 -0.5
46,303 - AZOBR_RS29860 0.84 -1.1
46,313 + AZOBR_RS29860 0.85 -0.7
46,314 - AZOBR_RS29860 0.85 -2.2
46,314 - AZOBR_RS29860 0.85 -0.6
46,330 + AZOBR_RS29860 0.87 -1.4
46,332 + AZOBR_RS29860 0.87 -0.9
46,332 + AZOBR_RS29860 0.87 -0.8
46,332 + AZOBR_RS29860 0.87 -0.7
46,332 + AZOBR_RS29860 0.87 -0.4
46,333 - AZOBR_RS29860 0.87 -0.9
46,333 - AZOBR_RS29860 0.87 -0.2
46,333 - AZOBR_RS29860 0.87 -0.2
46,333 - AZOBR_RS29860 0.87 -1.0
46,517 + -0.0
46,667 + -0.5
46,667 + +0.0
46,667 + -0.6
46,668 - +0.5
46,668 - -2.2
46,772 + AZOBR_RS29865 0.18 -0.0
46,772 + AZOBR_RS29865 0.18 -0.4
46,772 + AZOBR_RS29865 0.18 -3.0
46,772 + AZOBR_RS29865 0.18 -0.3
46,772 + AZOBR_RS29865 0.18 -0.8
46,773 - AZOBR_RS29865 0.18 +0.2
46,773 - AZOBR_RS29865 0.18 -0.3
46,773 - AZOBR_RS29865 0.18 -0.3
46,773 - AZOBR_RS29865 0.18 +0.3
46,773 - AZOBR_RS29865 0.18 -1.0
46,811 + AZOBR_RS29865 0.22 -0.2
46,812 - AZOBR_RS29865 0.22 -1.5
46,930 + AZOBR_RS29865 0.34 +0.1
46,930 + AZOBR_RS29865 0.34 -0.2
47,189 + AZOBR_RS29865 0.61 -0.2
47,189 + AZOBR_RS29865 0.61 +0.1
47,190 - AZOBR_RS29865 0.61 -2.5
47,190 - AZOBR_RS29865 0.61 +0.3
47,190 - AZOBR_RS29865 0.61 -0.5
47,190 - AZOBR_RS29865 0.61 -0.5
47,190 - AZOBR_RS29865 0.61 -0.8
47,222 + AZOBR_RS29865 0.65 -0.1
47,222 + AZOBR_RS29865 0.65 +0.4
47,223 - AZOBR_RS29865 0.65 -0.2
47,363 + AZOBR_RS29865 0.79 +0.0
47,363 + AZOBR_RS29865 0.79 -0.2
47,363 + AZOBR_RS29865 0.79 -0.5
47,363 + AZOBR_RS29865 0.79 -0.9
47,364 - AZOBR_RS29865 0.80 -0.9
47,364 - AZOBR_RS29865 0.80 +0.1
47,408 + AZOBR_RS29865 0.84 -0.3
47,408 + AZOBR_RS29865 0.84 -0.9
47,408 + AZOBR_RS29865 0.84 -0.6
47,408 + AZOBR_RS29865 0.84 -2.0
47,409 - AZOBR_RS29865 0.84 +0.6

Or see this region's nucleotide sequence