Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26960

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26950 and AZOBR_RS26955 are separated by 30 nucleotidesAZOBR_RS26955 and AZOBR_RS26960 are separated by 260 nucleotidesAZOBR_RS26960 and AZOBR_RS26965 are separated by 523 nucleotidesAZOBR_RS26965 and AZOBR_RS26970 are separated by 92 nucleotides AZOBR_RS26950: AZOBR_RS26950 - membrane protein, at 192,967 to 193,626 _RS26950 AZOBR_RS26955: AZOBR_RS26955 - two-component response regulator, at 193,657 to 194,043 _RS26955 AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016 _RS26960 AZOBR_RS26965: AZOBR_RS26965 - 30S ribosomal protein S21, at 196,540 to 196,743 _RS26965 AZOBR_RS26970: AZOBR_RS26970 - translation initiation factor IF-3, at 196,836 to 197,369 _RS26970 Position (kb) 194 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 194.106 kb on + strandat 194.107 kb on - strandat 194.186 kb on - strandat 194.186 kb on - strandat 194.421 kb on + strandat 194.568 kb on + strand, within AZOBR_RS26960at 194.568 kb on + strand, within AZOBR_RS26960at 194.568 kb on + strand, within AZOBR_RS26960at 194.595 kb on - strand, within AZOBR_RS26960at 194.638 kb on - strand, within AZOBR_RS26960at 194.638 kb on - strand, within AZOBR_RS26960at 194.694 kb on + strand, within AZOBR_RS26960at 194.694 kb on + strand, within AZOBR_RS26960at 194.695 kb on - strand, within AZOBR_RS26960at 194.695 kb on - strand, within AZOBR_RS26960at 194.882 kb on - strand, within AZOBR_RS26960at 194.882 kb on - strand, within AZOBR_RS26960at 195.342 kb on + strand, within AZOBR_RS26960at 195.342 kb on + strand, within AZOBR_RS26960at 195.342 kb on + strand, within AZOBR_RS26960at 195.342 kb on + strand, within AZOBR_RS26960at 195.342 kb on + strand, within AZOBR_RS26960at 195.342 kb on + strand, within AZOBR_RS26960at 195.343 kb on - strand, within AZOBR_RS26960at 195.453 kb on + strand, within AZOBR_RS26960at 195.454 kb on - strand, within AZOBR_RS26960at 195.454 kb on - strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.568 kb on - strand, within AZOBR_RS26960at 196.282 kb on + strandat 196.282 kb on + strandat 196.282 kb on + strandat 196.282 kb on + strandat 196.283 kb on - strandat 196.283 kb on - strandat 196.283 kb on - strandat 196.283 kb on - strandat 196.837 kb on + strandat 196.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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194,106 + +0.9
194,107 - -0.3
194,186 - +0.8
194,186 - +0.3
194,421 + -0.1
194,568 + AZOBR_RS26960 0.15 +0.8
194,568 + AZOBR_RS26960 0.15 +0.0
194,568 + AZOBR_RS26960 0.15 +0.2
194,595 - AZOBR_RS26960 0.17 +0.2
194,638 - AZOBR_RS26960 0.19 +0.2
194,638 - AZOBR_RS26960 0.19 +1.1
194,694 + AZOBR_RS26960 0.23 +0.0
194,694 + AZOBR_RS26960 0.23 +0.1
194,695 - AZOBR_RS26960 0.23 +0.7
194,695 - AZOBR_RS26960 0.23 +1.2
194,882 - AZOBR_RS26960 0.34 +0.1
194,882 - AZOBR_RS26960 0.34 -0.1
195,342 + AZOBR_RS26960 0.61 +1.1
195,342 + AZOBR_RS26960 0.61 +0.4
195,342 + AZOBR_RS26960 0.61 -0.5
195,342 + AZOBR_RS26960 0.61 -1.6
195,342 + AZOBR_RS26960 0.61 +0.1
195,342 + AZOBR_RS26960 0.61 -0.1
195,343 - AZOBR_RS26960 0.61 -0.3
195,453 + AZOBR_RS26960 0.67 +0.3
195,454 - AZOBR_RS26960 0.67 +0.5
195,454 - AZOBR_RS26960 0.67 +1.0
195,567 + AZOBR_RS26960 0.74 -0.1
195,567 + AZOBR_RS26960 0.74 -0.1
195,567 + AZOBR_RS26960 0.74 -1.2
195,567 + AZOBR_RS26960 0.74 +0.5
195,567 + AZOBR_RS26960 0.74 +0.2
195,568 - AZOBR_RS26960 0.74 +0.9
196,282 + +1.3
196,282 + -1.2
196,282 + -0.9
196,282 + +0.3
196,283 - -0.4
196,283 - -0.4
196,283 - +0.2
196,283 - -0.6
196,837 + -3.9
196,842 - -1.3

Or see this region's nucleotide sequence