Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25040

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25035 and AZOBR_RS25040 overlap by 1 nucleotidesAZOBR_RS25040 and AZOBR_RS25045 are separated by 107 nucleotides AZOBR_RS25035: AZOBR_RS25035 - hypothetical protein, at 673,553 to 674,992 _RS25035 AZOBR_RS25040: AZOBR_RS25040 - hypothetical protein, at 674,992 to 676,782 _RS25040 AZOBR_RS25045: AZOBR_RS25045 - hypothetical protein, at 676,890 to 678,887 _RS25045 Position (kb) 674 675 676 677Strain fitness (log2 ratio) -2 -1 0 1 2at 674.012 kb on + strand, within AZOBR_RS25035at 674.012 kb on + strand, within AZOBR_RS25035at 674.012 kb on + strand, within AZOBR_RS25035at 674.013 kb on - strand, within AZOBR_RS25035at 674.013 kb on - strand, within AZOBR_RS25035at 674.289 kb on - strand, within AZOBR_RS25035at 674.289 kb on - strand, within AZOBR_RS25035at 674.289 kb on - strand, within AZOBR_RS25035at 674.477 kb on + strand, within AZOBR_RS25035at 674.477 kb on + strand, within AZOBR_RS25035at 674.477 kb on + strand, within AZOBR_RS25035at 674.477 kb on + strand, within AZOBR_RS25035at 674.478 kb on - strand, within AZOBR_RS25035at 674.478 kb on - strand, within AZOBR_RS25035at 674.478 kb on - strand, within AZOBR_RS25035at 674.478 kb on - strand, within AZOBR_RS25035at 674.483 kb on + strand, within AZOBR_RS25035at 674.519 kb on + strand, within AZOBR_RS25035at 674.531 kb on + strand, within AZOBR_RS25035at 674.531 kb on + strand, within AZOBR_RS25035at 674.531 kb on + strand, within AZOBR_RS25035at 674.531 kb on + strand, within AZOBR_RS25035at 674.532 kb on - strand, within AZOBR_RS25035at 674.532 kb on - strand, within AZOBR_RS25035at 674.532 kb on - strand, within AZOBR_RS25035at 674.532 kb on - strand, within AZOBR_RS25035at 674.561 kb on + strand, within AZOBR_RS25035at 674.636 kb on + strand, within AZOBR_RS25035at 674.636 kb on + strand, within AZOBR_RS25035at 674.636 kb on + strand, within AZOBR_RS25035at 674.637 kb on - strand, within AZOBR_RS25035at 674.642 kb on + strand, within AZOBR_RS25035at 674.642 kb on + strand, within AZOBR_RS25035at 674.642 kb on + strand, within AZOBR_RS25035at 674.642 kb on + strand, within AZOBR_RS25035at 674.642 kb on + strand, within AZOBR_RS25035at 674.642 kb on + strand, within AZOBR_RS25035at 674.643 kb on - strand, within AZOBR_RS25035at 674.643 kb on - strand, within AZOBR_RS25035at 674.643 kb on - strand, within AZOBR_RS25035at 674.643 kb on - strand, within AZOBR_RS25035at 674.702 kb on + strand, within AZOBR_RS25035at 674.703 kb on - strand, within AZOBR_RS25035at 674.823 kb on + strand, within AZOBR_RS25035at 674.824 kb on - strand, within AZOBR_RS25035at 674.824 kb on - strand, within AZOBR_RS25035at 674.827 kb on + strand, within AZOBR_RS25035at 674.827 kb on + strand, within AZOBR_RS25035at 674.828 kb on - strand, within AZOBR_RS25035at 674.834 kb on + strand, within AZOBR_RS25035at 674.835 kb on - strand, within AZOBR_RS25035at 674.840 kb on + strand, within AZOBR_RS25035at 674.840 kb on + strand, within AZOBR_RS25035at 674.840 kb on + strand, within AZOBR_RS25035at 674.841 kb on - strand, within AZOBR_RS25035at 674.873 kb on + strandat 674.873 kb on + strandat 674.873 kb on + strandat 674.873 kb on + strandat 674.874 kb on - strandat 674.874 kb on - strandat 674.874 kb on - strandat 674.959 kb on + strandat 674.960 kb on - strandat 674.960 kb on - strandat 674.963 kb on + strandat 674.964 kb on - strandat 675.039 kb on + strandat 675.256 kb on + strand, within AZOBR_RS25040at 675.257 kb on - strand, within AZOBR_RS25040at 675.388 kb on + strand, within AZOBR_RS25040at 675.437 kb on - strand, within AZOBR_RS25040at 675.439 kb on + strand, within AZOBR_RS25040at 675.439 kb on + strand, within AZOBR_RS25040at 675.440 kb on - strand, within AZOBR_RS25040at 675.601 kb on + strand, within AZOBR_RS25040at 675.601 kb on + strand, within AZOBR_RS25040at 675.601 kb on + strand, within AZOBR_RS25040at 675.602 kb on - strand, within AZOBR_RS25040at 675.602 kb on - strand, within AZOBR_RS25040at 675.602 kb on - strand, within AZOBR_RS25040at 675.602 kb on - strand, within AZOBR_RS25040at 675.608 kb on + strand, within AZOBR_RS25040at 675.609 kb on - strand, within AZOBR_RS25040at 675.644 kb on + strand, within AZOBR_RS25040at 675.645 kb on - strand, within AZOBR_RS25040at 675.646 kb on + strand, within AZOBR_RS25040at 675.647 kb on - strand, within AZOBR_RS25040at 675.647 kb on - strand, within AZOBR_RS25040at 675.647 kb on - strand, within AZOBR_RS25040at 675.647 kb on - strand, within AZOBR_RS25040at 675.647 kb on - strand, within AZOBR_RS25040at 675.647 kb on - strand, within AZOBR_RS25040at 675.688 kb on + strand, within AZOBR_RS25040at 675.688 kb on + strand, within AZOBR_RS25040at 675.688 kb on + strandat 675.689 kb on - strand, within AZOBR_RS25040at 675.689 kb on - strand, within AZOBR_RS25040at 675.689 kb on - strand, within AZOBR_RS25040at 675.706 kb on + strand, within AZOBR_RS25040at 675.706 kb on + strand, within AZOBR_RS25040at 675.707 kb on - strand, within AZOBR_RS25040at 675.880 kb on - strand, within AZOBR_RS25040at 675.964 kb on + strand, within AZOBR_RS25040at 675.965 kb on - strand, within AZOBR_RS25040at 675.970 kb on + strand, within AZOBR_RS25040at 675.971 kb on - strand, within AZOBR_RS25040at 676.039 kb on + strand, within AZOBR_RS25040at 676.039 kb on + strand, within AZOBR_RS25040at 676.039 kb on + strand, within AZOBR_RS25040at 676.039 kb on + strand, within AZOBR_RS25040at 676.039 kb on + strand, within AZOBR_RS25040at 676.039 kb on + strand, within AZOBR_RS25040at 676.039 kb on + strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.040 kb on - strand, within AZOBR_RS25040at 676.078 kb on + strand, within AZOBR_RS25040at 676.078 kb on + strand, within AZOBR_RS25040at 676.078 kb on + strand, within AZOBR_RS25040at 676.078 kb on + strand, within AZOBR_RS25040at 676.079 kb on - strand, within AZOBR_RS25040at 676.271 kb on - strand, within AZOBR_RS25040at 676.271 kb on - strand, within AZOBR_RS25040at 676.279 kb on + strand, within AZOBR_RS25040at 676.279 kb on + strand, within AZOBR_RS25040at 676.300 kb on + strand, within AZOBR_RS25040at 676.300 kb on + strand, within AZOBR_RS25040at 676.301 kb on - strand, within AZOBR_RS25040at 676.301 kb on - strand, within AZOBR_RS25040at 676.303 kb on + strand, within AZOBR_RS25040at 676.304 kb on - strand, within AZOBR_RS25040at 676.304 kb on - strand, within AZOBR_RS25040at 676.304 kb on - strand, within AZOBR_RS25040at 676.306 kb on + strandat 676.307 kb on - strand, within AZOBR_RS25040at 676.444 kb on + strand, within AZOBR_RS25040at 676.444 kb on + strand, within AZOBR_RS25040at 676.445 kb on - strand, within AZOBR_RS25040at 676.445 kb on - strand, within AZOBR_RS25040at 676.445 kb on - strand, within AZOBR_RS25040at 676.447 kb on + strand, within AZOBR_RS25040at 676.447 kb on + strand, within AZOBR_RS25040at 676.447 kb on + strand, within AZOBR_RS25040at 676.448 kb on - strand, within AZOBR_RS25040at 676.448 kb on - strand, within AZOBR_RS25040at 676.492 kb on - strand, within AZOBR_RS25040at 676.492 kb on - strand, within AZOBR_RS25040at 676.537 kb on + strand, within AZOBR_RS25040at 676.538 kb on - strand, within AZOBR_RS25040at 676.657 kb on + strandat 676.660 kb on + strandat 676.660 kb on + strandat 676.661 kb on - strandat 676.729 kb on + strandat 676.857 kb on + strandat 676.857 kb on + strandat 676.929 kb on + strandat 676.929 kb on + strandat 676.929 kb on + strandat 676.929 kb on + strandat 676.929 kb on + strandat 676.929 kb on + strandat 676.929 kb on + strandat 676.930 kb on - strandat 676.930 kb on - strandat 676.930 kb on - strandat 676.930 kb on - strandat 676.930 kb on - strandat 676.930 kb on - strandat 676.930 kb on - strandat 677.065 kb on - strandat 677.065 kb on - strandat 677.216 kb on + strand, within AZOBR_RS25045at 677.296 kb on - strand, within AZOBR_RS25045at 677.751 kb on + strand, within AZOBR_RS25045at 677.751 kb on + strand, within AZOBR_RS25045at 677.752 kb on - strand, within AZOBR_RS25045at 677.772 kb on + strand, within AZOBR_RS25045at 677.772 kb on + strand, within AZOBR_RS25045at 677.772 kb on + strand, within AZOBR_RS25045

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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674,012 + AZOBR_RS25035 0.32 +0.6
674,012 + AZOBR_RS25035 0.32 +0.7
674,012 + AZOBR_RS25035 0.32 +0.0
674,013 - AZOBR_RS25035 0.32 -0.3
674,013 - AZOBR_RS25035 0.32 -0.8
674,289 - AZOBR_RS25035 0.51 +0.2
674,289 - AZOBR_RS25035 0.51 -1.5
674,289 - AZOBR_RS25035 0.51 -0.2
674,477 + AZOBR_RS25035 0.64 +1.0
674,477 + AZOBR_RS25035 0.64 +0.2
674,477 + AZOBR_RS25035 0.64 -1.5
674,477 + AZOBR_RS25035 0.64 +0.4
674,478 - AZOBR_RS25035 0.64 +0.2
674,478 - AZOBR_RS25035 0.64 +1.4
674,478 - AZOBR_RS25035 0.64 -0.4
674,478 - AZOBR_RS25035 0.64 +0.6
674,483 + AZOBR_RS25035 0.65 +1.3
674,519 + AZOBR_RS25035 0.67 +0.2
674,531 + AZOBR_RS25035 0.68 -0.2
674,531 + AZOBR_RS25035 0.68 -0.4
674,531 + AZOBR_RS25035 0.68 +0.3
674,531 + AZOBR_RS25035 0.68 +0.8
674,532 - AZOBR_RS25035 0.68 -0.2
674,532 - AZOBR_RS25035 0.68 +0.3
674,532 - AZOBR_RS25035 0.68 -1.2
674,532 - AZOBR_RS25035 0.68 -0.3
674,561 + AZOBR_RS25035 0.70 -0.9
674,636 + AZOBR_RS25035 0.75 +0.1
674,636 + AZOBR_RS25035 0.75 -0.3
674,636 + AZOBR_RS25035 0.75 -0.5
674,637 - AZOBR_RS25035 0.75 +0.5
674,642 + AZOBR_RS25035 0.76 +0.1
674,642 + AZOBR_RS25035 0.76 +2.0
674,642 + AZOBR_RS25035 0.76 -0.0
674,642 + AZOBR_RS25035 0.76 +0.1
674,642 + AZOBR_RS25035 0.76 +0.5
674,642 + AZOBR_RS25035 0.76 -0.3
674,643 - AZOBR_RS25035 0.76 -1.2
674,643 - AZOBR_RS25035 0.76 -0.7
674,643 - AZOBR_RS25035 0.76 -0.2
674,643 - AZOBR_RS25035 0.76 -0.2
674,702 + AZOBR_RS25035 0.80 +0.2
674,703 - AZOBR_RS25035 0.80 -0.2
674,823 + AZOBR_RS25035 0.88 -1.3
674,824 - AZOBR_RS25035 0.88 -1.7
674,824 - AZOBR_RS25035 0.88 -0.1
674,827 + AZOBR_RS25035 0.88 -0.3
674,827 + AZOBR_RS25035 0.88 +0.9
674,828 - AZOBR_RS25035 0.89 +0.2
674,834 + AZOBR_RS25035 0.89 +0.5
674,835 - AZOBR_RS25035 0.89 +0.1
674,840 + AZOBR_RS25035 0.89 -0.0
674,840 + AZOBR_RS25035 0.89 +0.1
674,840 + AZOBR_RS25035 0.89 +0.1
674,841 - AZOBR_RS25035 0.89 +0.1
674,873 + -0.3
674,873 + +0.5
674,873 + -0.7
674,873 + -0.1
674,874 - -0.9
674,874 - -0.2
674,874 - -0.5
674,959 + +0.3
674,960 - -0.0
674,960 - +0.1
674,963 + +0.3
674,964 - +0.1
675,039 + +0.1
675,256 + AZOBR_RS25040 0.15 +0.5
675,257 - AZOBR_RS25040 0.15 -0.1
675,388 + AZOBR_RS25040 0.22 -0.3
675,437 - AZOBR_RS25040 0.25 +0.0
675,439 + AZOBR_RS25040 0.25 -0.1
675,439 + AZOBR_RS25040 0.25 -0.6
675,440 - AZOBR_RS25040 0.25 -0.2
675,601 + AZOBR_RS25040 0.34 -0.2
675,601 + AZOBR_RS25040 0.34 +0.1
675,601 + AZOBR_RS25040 0.34 -0.1
675,602 - AZOBR_RS25040 0.34 -0.7
675,602 - AZOBR_RS25040 0.34 -0.1
675,602 - AZOBR_RS25040 0.34 -1.9
675,602 - AZOBR_RS25040 0.34 -0.7
675,608 + AZOBR_RS25040 0.34 -0.1
675,609 - AZOBR_RS25040 0.34 -0.4
675,644 + AZOBR_RS25040 0.36 -0.3
675,645 - AZOBR_RS25040 0.36 -0.5
675,646 + AZOBR_RS25040 0.37 -0.3
675,647 - AZOBR_RS25040 0.37 +0.3
675,647 - AZOBR_RS25040 0.37 -0.0
675,647 - AZOBR_RS25040 0.37 +1.1
675,647 - AZOBR_RS25040 0.37 -1.9
675,647 - AZOBR_RS25040 0.37 -0.3
675,647 - AZOBR_RS25040 0.37 +0.3
675,688 + AZOBR_RS25040 0.39 -0.0
675,688 + AZOBR_RS25040 0.39 -0.3
675,688 + +0.0
675,689 - AZOBR_RS25040 0.39 +0.4
675,689 - AZOBR_RS25040 0.39 -0.1
675,689 - AZOBR_RS25040 0.39 -0.1
675,706 + AZOBR_RS25040 0.40 -0.5
675,706 + AZOBR_RS25040 0.40 -0.3
675,707 - AZOBR_RS25040 0.40 +0.2
675,880 - AZOBR_RS25040 0.50 +0.1
675,964 + AZOBR_RS25040 0.54 -0.1
675,965 - AZOBR_RS25040 0.54 -0.4
675,970 + AZOBR_RS25040 0.55 +1.2
675,971 - AZOBR_RS25040 0.55 +0.2
676,039 + AZOBR_RS25040 0.58 +0.4
676,039 + AZOBR_RS25040 0.58 -0.2
676,039 + AZOBR_RS25040 0.58 +0.1
676,039 + AZOBR_RS25040 0.58 +0.1
676,039 + AZOBR_RS25040 0.58 -1.9
676,039 + AZOBR_RS25040 0.58 +0.7
676,039 + AZOBR_RS25040 0.58 +0.1
676,040 - AZOBR_RS25040 0.59 -0.1
676,040 - AZOBR_RS25040 0.59 +0.0
676,040 - AZOBR_RS25040 0.59 -0.4
676,040 - AZOBR_RS25040 0.59 -0.3
676,040 - AZOBR_RS25040 0.59 +0.1
676,040 - AZOBR_RS25040 0.59 -0.0
676,040 - AZOBR_RS25040 0.59 -0.7
676,040 - AZOBR_RS25040 0.59 -0.5
676,040 - AZOBR_RS25040 0.59 -2.4
676,078 + AZOBR_RS25040 0.61 +0.6
676,078 + AZOBR_RS25040 0.61 -0.5
676,078 + AZOBR_RS25040 0.61 +0.1
676,078 + AZOBR_RS25040 0.61 +0.1
676,079 - AZOBR_RS25040 0.61 +1.3
676,271 - AZOBR_RS25040 0.71 +0.2
676,271 - AZOBR_RS25040 0.71 -0.2
676,279 + AZOBR_RS25040 0.72 -0.3
676,279 + AZOBR_RS25040 0.72 -0.3
676,300 + AZOBR_RS25040 0.73 +0.5
676,300 + AZOBR_RS25040 0.73 -0.4
676,301 - AZOBR_RS25040 0.73 -1.2
676,301 - AZOBR_RS25040 0.73 +0.6
676,303 + AZOBR_RS25040 0.73 -1.1
676,304 - AZOBR_RS25040 0.73 +0.6
676,304 - AZOBR_RS25040 0.73 -0.5
676,304 - AZOBR_RS25040 0.73 -1.1
676,306 + +0.4
676,307 - AZOBR_RS25040 0.73 +0.7
676,444 + AZOBR_RS25040 0.81 -0.7
676,444 + AZOBR_RS25040 0.81 +0.5
676,445 - AZOBR_RS25040 0.81 -0.3
676,445 - AZOBR_RS25040 0.81 -0.1
676,445 - AZOBR_RS25040 0.81 -0.0
676,447 + AZOBR_RS25040 0.81 -0.2
676,447 + AZOBR_RS25040 0.81 -0.4
676,447 + AZOBR_RS25040 0.81 -0.4
676,448 - AZOBR_RS25040 0.81 +0.0
676,448 - AZOBR_RS25040 0.81 +0.3
676,492 - AZOBR_RS25040 0.84 +0.2
676,492 - AZOBR_RS25040 0.84 -0.1
676,537 + AZOBR_RS25040 0.86 +0.0
676,538 - AZOBR_RS25040 0.86 -0.2
676,657 + +0.4
676,660 + +0.5
676,660 + +0.1
676,661 - +0.1
676,729 + +0.0
676,857 + +0.2
676,857 + -0.4
676,929 + -0.4
676,929 + +0.2
676,929 + -0.3
676,929 + -0.2
676,929 + +0.4
676,929 + +0.6
676,929 + +0.3
676,930 - -0.9
676,930 - -0.9
676,930 - -0.2
676,930 - -0.1
676,930 - +0.5
676,930 - +0.4
676,930 - -0.2
677,065 - -0.0
677,065 - +0.0
677,216 + AZOBR_RS25045 0.16 -0.2
677,296 - AZOBR_RS25045 0.20 +1.5
677,751 + AZOBR_RS25045 0.43 -1.3
677,751 + AZOBR_RS25045 0.43 -0.2
677,752 - AZOBR_RS25045 0.43 -0.4
677,772 + AZOBR_RS25045 0.44 -0.2
677,772 + AZOBR_RS25045 0.44 -0.2
677,772 + AZOBR_RS25045 0.44 +0.6

Or see this region's nucleotide sequence