Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17290 and AZOBR_RS17295 are separated by 88 nucleotides AZOBR_RS17295 and AZOBR_RS17300 are separated by 154 nucleotides AZOBR_RS17300 and AZOBR_RS17305 are separated by 1 nucleotides AZOBR_RS17305 and AZOBR_RS17310 are separated by 99 nucleotides AZOBR_RS17310 and AZOBR_RS17315 are separated by 35 nucleotides AZOBR_RS17315 and AZOBR_RS17320 are separated by 1 nucleotides AZOBR_RS17320 and AZOBR_RS17325 are separated by 153 nucleotides
AZOBR_RS17290: AZOBR_RS17290 - membrane protein, at 629,294 to 629,767
_RS17290
AZOBR_RS17295: AZOBR_RS17295 - hypothetical protein, at 629,856 to 631,229
_RS17295
AZOBR_RS17300: AZOBR_RS17300 - tRNA-Thr, at 631,384 to 631,458
_RS17300
AZOBR_RS17305: AZOBR_RS17305 - tRNA-Ala, at 631,460 to 631,535
_RS17305
AZOBR_RS17310: AZOBR_RS17310 - tRNA-Asp, at 631,635 to 631,711
_RS17310
AZOBR_RS17315: AZOBR_RS17315 - tRNA-Val, at 631,747 to 631,821
_RS17315
AZOBR_RS17320: AZOBR_RS17320 - tRNA-Gln, at 631,823 to 631,896
_RS17320
AZOBR_RS17325: AZOBR_RS17325 - hypothetical protein, at 632,050 to 632,259
_RS17325
Position (kb) 629
630
631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 628.906 kb on + strand at 629.006 kb on - strand at 629.006 kb on - strand at 629.006 kb on - strand at 629.077 kb on + strand at 629.077 kb on + strand at 629.077 kb on + strand at 629.078 kb on - strand at 629.166 kb on - strand at 629.210 kb on + strand at 629.211 kb on - strand at 629.211 kb on - strand at 629.239 kb on + strand at 629.252 kb on + strand at 629.252 kb on + strand at 629.252 kb on + strand at 629.252 kb on + strand at 629.253 kb on - strand at 629.253 kb on - strand at 629.253 kb on - strand at 629.267 kb on + strand at 629.267 kb on + strand at 629.267 kb on + strand at 629.268 kb on - strand at 629.269 kb on + strand at 629.270 kb on - strand at 629.486 kb on + strand, within AZOBR_RS17290 at 629.487 kb on - strand, within AZOBR_RS17290 at 629.663 kb on + strand, within AZOBR_RS17290 at 629.664 kb on - strand, within AZOBR_RS17290 at 629.690 kb on + strand, within AZOBR_RS17290 at 629.765 kb on + strand at 629.765 kb on + strand at 629.766 kb on - strand at 629.969 kb on - strand at 630.076 kb on + strand, within AZOBR_RS17295 at 630.076 kb on + strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.077 kb on - strand, within AZOBR_RS17295 at 630.494 kb on - strand, within AZOBR_RS17295 at 630.494 kb on - strand, within AZOBR_RS17295 at 630.494 kb on - strand, within AZOBR_RS17295 at 630.535 kb on + strand, within AZOBR_RS17295 at 630.535 kb on + strand, within AZOBR_RS17295 at 630.536 kb on - strand, within AZOBR_RS17295 at 630.557 kb on - strand, within AZOBR_RS17295 at 630.637 kb on - strand, within AZOBR_RS17295 at 630.754 kb on + strand, within AZOBR_RS17295 at 630.820 kb on + strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.821 kb on - strand, within AZOBR_RS17295 at 630.954 kb on - strand, within AZOBR_RS17295 at 630.958 kb on + strand, within AZOBR_RS17295 at 630.958 kb on + strand, within AZOBR_RS17295 at 630.959 kb on - strand, within AZOBR_RS17295 at 630.959 kb on - strand, within AZOBR_RS17295 at 630.959 kb on - strand, within AZOBR_RS17295 at 631.207 kb on - strand at 631.392 kb on - strand, within AZOBR_RS17300 at 631.730 kb on + strand at 631.773 kb on + strand, within AZOBR_RS17315 at 631.841 kb on + strand, within AZOBR_RS17320 at 632.131 kb on + strand, within AZOBR_RS17325 at 632.131 kb on + strand, within AZOBR_RS17325 at 632.131 kb on + strand, within AZOBR_RS17325 at 632.131 kb on + strand at 632.132 kb on - strand, within AZOBR_RS17325 at 632.168 kb on - strand, within AZOBR_RS17325 at 632.168 kb on - strand, within AZOBR_RS17325
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM remove 628,906 + -0.5 629,006 - -2.1 629,006 - -0.3 629,006 - +0.1 629,077 + -0.9 629,077 + +0.1 629,077 + +0.5 629,078 - -0.1 629,166 - -0.2 629,210 + -0.2 629,211 - -0.3 629,211 - +0.2 629,239 + -1.0 629,252 + +0.0 629,252 + -0.2 629,252 + +0.0 629,252 + -0.2 629,253 - +0.8 629,253 - +0.9 629,253 - -0.2 629,267 + +0.3 629,267 + -0.2 629,267 + +0.2 629,268 - +0.4 629,269 + -1.3 629,270 - -0.4 629,486 + AZOBR_RS17290 0.41 +0.8 629,487 - AZOBR_RS17290 0.41 -1.1 629,663 + AZOBR_RS17290 0.78 -0.4 629,664 - AZOBR_RS17290 0.78 -0.2 629,690 + AZOBR_RS17290 0.84 -1.9 629,765 + +0.1 629,765 + +0.2 629,766 - +0.2 629,969 - +0.0 630,076 + AZOBR_RS17295 0.16 -0.2 630,076 + AZOBR_RS17295 0.16 +0.2 630,077 - AZOBR_RS17295 0.16 -1.0 630,077 - AZOBR_RS17295 0.16 +0.0 630,077 - AZOBR_RS17295 0.16 -0.3 630,077 - AZOBR_RS17295 0.16 -0.2 630,077 - AZOBR_RS17295 0.16 -1.1 630,077 - AZOBR_RS17295 0.16 -0.3 630,077 - AZOBR_RS17295 0.16 -1.0 630,494 - AZOBR_RS17295 0.46 +0.3 630,494 - AZOBR_RS17295 0.46 -0.5 630,494 - AZOBR_RS17295 0.46 -1.0 630,535 + AZOBR_RS17295 0.49 -0.3 630,535 + AZOBR_RS17295 0.49 -0.2 630,536 - AZOBR_RS17295 0.49 -0.3 630,557 - AZOBR_RS17295 0.51 -0.3 630,637 - AZOBR_RS17295 0.57 -0.5 630,754 + AZOBR_RS17295 0.65 -0.2 630,820 + AZOBR_RS17295 0.70 +0.4 630,821 - AZOBR_RS17295 0.70 -0.1 630,821 - AZOBR_RS17295 0.70 +0.1 630,821 - AZOBR_RS17295 0.70 -0.1 630,821 - AZOBR_RS17295 0.70 -0.8 630,954 - AZOBR_RS17295 0.80 +0.0 630,958 + AZOBR_RS17295 0.80 -0.2 630,958 + AZOBR_RS17295 0.80 +0.4 630,959 - AZOBR_RS17295 0.80 -0.6 630,959 - AZOBR_RS17295 0.80 -0.7 630,959 - AZOBR_RS17295 0.80 -1.1 631,207 - -0.2 631,392 - AZOBR_RS17300 0.11 +0.6 631,730 + +0.9 631,773 + AZOBR_RS17315 0.35 +0.9 631,841 + AZOBR_RS17320 0.24 -0.2 632,131 + AZOBR_RS17325 0.39 -1.0 632,131 + AZOBR_RS17325 0.39 +0.8 632,131 + AZOBR_RS17325 0.39 +0.1 632,131 + +0.3 632,132 - AZOBR_RS17325 0.39 +0.3 632,168 - AZOBR_RS17325 0.56 -0.2 632,168 - AZOBR_RS17325 0.56 +0.2
Or see this region's nucleotide sequence