Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09275
Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 2 mM |
---|---|---|---|---|---|
remove | |||||
1,936,259 | - | AZOBR_RS09270 | 0.51 | +0.2 | |
1,936,366 | + | AZOBR_RS09270 | 0.58 | -0.8 | |
1,936,366 | + | AZOBR_RS09270 | 0.58 | +1.4 | |
1,936,630 | + | AZOBR_RS09270 | 0.75 | -1.4 | |
1,936,630 | + | AZOBR_RS09270 | 0.75 | -0.6 | |
1,936,630 | + | AZOBR_RS09270 | 0.75 | +0.3 | |
1,936,630 | + | AZOBR_RS09270 | 0.75 | -0.1 | |
1,936,804 | + | AZOBR_RS09270 | 0.86 | -0.3 | |
1,936,831 | + | AZOBR_RS09270 | 0.88 | -0.0 | |
1,936,831 | + | AZOBR_RS09270 | 0.88 | +1.5 | |
1,936,831 | + | AZOBR_RS09270 | 0.88 | -0.8 | |
1,936,894 | + | +0.2 | |||
1,936,894 | + | +1.3 | |||
1,936,924 | + | -1.3 | |||
1,936,930 | + | +1.4 | |||
1,936,930 | + | -0.4 | |||
1,936,930 | + | -0.2 | |||
1,936,931 | - | +0.4 | |||
1,936,931 | - | +0.3 | |||
1,937,003 | - | -0.1 | |||
1,937,014 | + | +0.8 | |||
1,937,014 | + | -0.1 | |||
1,937,015 | - | +0.2 | |||
1,937,647 | + | AZOBR_RS09275 | 0.46 | +0.1 | |
1,937,647 | + | AZOBR_RS09275 | 0.46 | -0.6 | |
1,937,647 | + | AZOBR_RS09275 | 0.46 | -0.3 | |
1,937,648 | - | AZOBR_RS09275 | 0.46 | -1.2 | |
1,938,486 | + | AZOBR_RS09280 | 0.39 | -0.2 | |
1,938,486 | + | AZOBR_RS09280 | 0.39 | -1.0 | |
1,938,550 | - | AZOBR_RS09280 | 0.52 | +0.1 | |
1,938,610 | - | AZOBR_RS09280 | 0.64 | -0.0 |
Or see this region's nucleotide sequence