Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09060

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09050 and AZOBR_RS09055 are separated by 10 nucleotidesAZOBR_RS09055 and AZOBR_RS09060 are separated by 5 nucleotidesAZOBR_RS09060 and AZOBR_RS09065 are separated by 1 nucleotidesAZOBR_RS09065 and AZOBR_RS09070 are separated by 192 nucleotides AZOBR_RS09050: AZOBR_RS09050 - Holliday junction DNA helicase RuvB, at 1,891,139 to 1,892,230 _RS09050 AZOBR_RS09055: AZOBR_RS09055 - acyl-CoA thioester hydrolase, at 1,892,241 to 1,892,702 _RS09055 AZOBR_RS09060: AZOBR_RS09060 - biopolymer transporter ExbB, at 1,892,708 to 1,893,430 _RS09060 AZOBR_RS09065: AZOBR_RS09065 - biopolymer transporter ExbD, at 1,893,432 to 1,893,914 _RS09065 AZOBR_RS09070: AZOBR_RS09070 - hypothetical protein, at 1,894,107 to 1,894,604 _RS09070 Position (kb) 1892 1893 1894Strain fitness (log2 ratio) -3 -2 -1 0 1at 1891.955 kb on + strand, within AZOBR_RS09050at 1891.979 kb on + strandat 1892.301 kb on + strand, within AZOBR_RS09055at 1892.304 kb on + strand, within AZOBR_RS09055at 1892.305 kb on - strand, within AZOBR_RS09055at 1892.334 kb on + strand, within AZOBR_RS09055at 1892.334 kb on + strand, within AZOBR_RS09055at 1892.346 kb on + strand, within AZOBR_RS09055at 1892.346 kb on + strand, within AZOBR_RS09055at 1892.347 kb on - strand, within AZOBR_RS09055

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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1,891,955 + AZOBR_RS09050 0.75 -1.7
1,891,979 + -0.6
1,892,301 + AZOBR_RS09055 0.13 -1.0
1,892,304 + AZOBR_RS09055 0.14 -0.1
1,892,305 - AZOBR_RS09055 0.14 -3.1
1,892,334 + AZOBR_RS09055 0.20 +0.6
1,892,334 + AZOBR_RS09055 0.20 -1.3
1,892,346 + AZOBR_RS09055 0.23 +0.2
1,892,346 + AZOBR_RS09055 0.23 -0.4
1,892,347 - AZOBR_RS09055 0.23 -2.0

Or see this region's nucleotide sequence