Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08820

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08810 and AZOBR_RS08815 are separated by 24 nucleotidesAZOBR_RS08815 and AZOBR_RS08820 are separated by 158 nucleotidesAZOBR_RS08820 and AZOBR_RS08825 are separated by 147 nucleotides AZOBR_RS08810: AZOBR_RS08810 - hypothetical protein, at 1,844,245 to 1,844,919 _RS08810 AZOBR_RS08815: AZOBR_RS08815 - protein phosphatase, at 1,844,944 to 1,845,723 _RS08815 AZOBR_RS08820: AZOBR_RS08820 - hypothetical protein, at 1,845,882 to 1,846,151 _RS08820 AZOBR_RS08825: AZOBR_RS08825 - agmatine deiminase, at 1,846,299 to 1,847,315 _RS08825 Position (kb) 1845 1846 1847Strain fitness (log2 ratio) -1 0 1at 1844.941 kb on + strandat 1844.941 kb on + strandat 1844.941 kb on + strandat 1844.942 kb on - strandat 1845.824 kb on + strandat 1845.825 kb on - strandat 1846.161 kb on - strandat 1846.174 kb on - strandat 1846.243 kb on - strandat 1846.474 kb on + strand, within AZOBR_RS08825at 1846.487 kb on - strand, within AZOBR_RS08825at 1846.963 kb on + strand, within AZOBR_RS08825

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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1,844,941 + -0.5
1,844,941 + +0.1
1,844,941 + -1.0
1,844,942 - -0.9
1,845,824 + -0.0
1,845,825 - -0.4
1,846,161 - -0.9
1,846,174 - +0.5
1,846,243 - -0.0
1,846,474 + AZOBR_RS08825 0.17 -0.6
1,846,487 - AZOBR_RS08825 0.18 -0.2
1,846,963 + AZOBR_RS08825 0.65 -1.1

Or see this region's nucleotide sequence