Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08205 and AZOBR_RS08210 are separated by 31 nucleotides AZOBR_RS08210 and AZOBR_RS08215 are separated by 5 nucleotides AZOBR_RS08215 and AZOBR_RS08220 are separated by 129 nucleotides
AZOBR_RS08205: AZOBR_RS08205 - glycosyl transferase, at 1,729,281 to 1,730,009
_RS08205
AZOBR_RS08210: AZOBR_RS08210 - lipid A biosynthesis, at 1,730,041 to 1,730,376
_RS08210
AZOBR_RS08215: AZOBR_RS08215 - glycosyl transferase, at 1,730,382 to 1,732,058
_RS08215
AZOBR_RS08220: AZOBR_RS08220 - hypothetical protein, at 1,732,188 to 1,732,469
_RS08220
Position (kb) 1730
1731
1732
1733 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1729.401 kb on + strand, within AZOBR_RS08205 at 1729.401 kb on + strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand at 1729.864 kb on - strand, within AZOBR_RS08205 at 1729.864 kb on - strand at 1729.960 kb on - strand at 1730.239 kb on + strand, within AZOBR_RS08210 at 1730.545 kb on - strand at 1730.598 kb on + strand, within AZOBR_RS08215 at 1730.598 kb on + strand, within AZOBR_RS08215 at 1730.599 kb on - strand, within AZOBR_RS08215 at 1731.204 kb on + strand, within AZOBR_RS08215 at 1731.384 kb on + strand, within AZOBR_RS08215 at 1731.384 kb on + strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.385 kb on - strand, within AZOBR_RS08215 at 1731.549 kb on + strand, within AZOBR_RS08215 at 1731.613 kb on - strand, within AZOBR_RS08215 at 1731.613 kb on - strand, within AZOBR_RS08215 at 1732.005 kb on + strand at 1732.006 kb on - strand at 1732.006 kb on - strand at 1732.038 kb on + strand at 1732.105 kb on - strand at 1732.207 kb on + strand at 1732.278 kb on + strand, within AZOBR_RS08220 at 1732.279 kb on - strand, within AZOBR_RS08220 at 1732.279 kb on - strand, within AZOBR_RS08220 at 1732.307 kb on + strand, within AZOBR_RS08220 at 1732.307 kb on + strand, within AZOBR_RS08220 at 1732.308 kb on - strand, within AZOBR_RS08220 at 1732.308 kb on - strand, within AZOBR_RS08220 at 1732.568 kb on + strand at 1732.568 kb on + strand at 1732.718 kb on + strand at 1732.971 kb on - strand at 1732.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM remove 1,729,401 + AZOBR_RS08205 0.16 -0.5 1,729,401 + AZOBR_RS08205 0.16 -3.1 1,729,402 - AZOBR_RS08205 0.17 -3.3 1,729,402 - AZOBR_RS08205 0.17 -1.1 1,729,402 - -0.1 1,729,402 - AZOBR_RS08205 0.17 -0.1 1,729,402 - AZOBR_RS08205 0.17 -1.1 1,729,402 - AZOBR_RS08205 0.17 +1.2 1,729,863 + AZOBR_RS08205 0.80 -2.2 1,729,863 + AZOBR_RS08205 0.80 -2.0 1,729,863 + AZOBR_RS08205 0.80 -0.1 1,729,863 + AZOBR_RS08205 0.80 -1.9 1,729,863 + -0.5 1,729,864 - AZOBR_RS08205 0.80 -2.0 1,729,864 - -0.1 1,729,960 - -1.5 1,730,239 + AZOBR_RS08210 0.59 -1.0 1,730,545 - -1.1 1,730,598 + AZOBR_RS08215 0.13 -1.6 1,730,598 + AZOBR_RS08215 0.13 -2.0 1,730,599 - AZOBR_RS08215 0.13 -1.8 1,731,204 + AZOBR_RS08215 0.49 -1.0 1,731,384 + AZOBR_RS08215 0.60 -2.0 1,731,384 + AZOBR_RS08215 0.60 -0.5 1,731,385 - AZOBR_RS08215 0.60 -0.1 1,731,385 - AZOBR_RS08215 0.60 -0.3 1,731,385 - AZOBR_RS08215 0.60 -0.0 1,731,385 - AZOBR_RS08215 0.60 +1.4 1,731,549 + AZOBR_RS08215 0.70 -0.4 1,731,613 - AZOBR_RS08215 0.73 -0.5 1,731,613 - AZOBR_RS08215 0.73 -1.5 1,732,005 + -1.1 1,732,006 - +1.6 1,732,006 - -0.4 1,732,038 + -0.5 1,732,105 - -0.3 1,732,207 + +0.4 1,732,278 + AZOBR_RS08220 0.32 -0.8 1,732,279 - AZOBR_RS08220 0.32 +0.3 1,732,279 - AZOBR_RS08220 0.32 +0.7 1,732,307 + AZOBR_RS08220 0.42 -0.3 1,732,307 + AZOBR_RS08220 0.42 +0.8 1,732,308 - AZOBR_RS08220 0.43 +0.0 1,732,308 - AZOBR_RS08220 0.43 -0.1 1,732,568 + +0.1 1,732,568 + +0.1 1,732,718 + -1.0 1,732,971 - +0.2 1,732,971 - +0.0
Or see this region's nucleotide sequence