Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07245

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07235 and AZOBR_RS07245 are separated by 828 nucleotidesAZOBR_RS07245 and AZOBR_RS07250 are separated by 33 nucleotidesAZOBR_RS07250 and AZOBR_RS07255 are separated by 28 nucleotidesAZOBR_RS07255 and AZOBR_RS07260 are separated by 25 nucleotides AZOBR_RS07235: AZOBR_RS07235 - biotin, at 1,527,245 to 1,528,006 _RS07235 AZOBR_RS07245: AZOBR_RS07245 - RNA-metabolising metallo-beta-lactamase, at 1,528,835 to 1,530,499 _RS07245 AZOBR_RS07250: AZOBR_RS07250 - methylmalonyl-CoA epimerase, at 1,530,533 to 1,530,937 _RS07250 AZOBR_RS07255: AZOBR_RS07255 - hypothetical protein, at 1,530,966 to 1,531,214 _RS07255 AZOBR_RS07260: AZOBR_RS07260 - DNA-3-methyladenine glycosylase, at 1,531,240 to 1,531,839 _RS07260 Position (kb) 1528 1529 1530 1531Strain fitness (log2 ratio) -1 0 1 2at 1528.862 kb on + strandat 1528.862 kb on + strandat 1528.863 kb on - strandat 1529.087 kb on + strand, within AZOBR_RS07245at 1529.088 kb on - strand, within AZOBR_RS07245at 1529.117 kb on + strand, within AZOBR_RS07245at 1529.244 kb on - strand, within AZOBR_RS07245at 1529.244 kb on - strand, within AZOBR_RS07245at 1529.244 kb on - strand, within AZOBR_RS07245at 1529.696 kb on + strand, within AZOBR_RS07245at 1529.697 kb on - strand, within AZOBR_RS07245at 1529.965 kb on + strand, within AZOBR_RS07245at 1529.965 kb on + strand, within AZOBR_RS07245at 1529.966 kb on - strand, within AZOBR_RS07245at 1529.966 kb on - strand, within AZOBR_RS07245at 1529.966 kb on - strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1530.495 kb on + strandat 1530.776 kb on + strand, within AZOBR_RS07250at 1530.777 kb on - strand, within AZOBR_RS07250at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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1,528,862 + -0.2
1,528,862 + -0.2
1,528,863 - +0.0
1,529,087 + AZOBR_RS07245 0.15 -1.1
1,529,088 - AZOBR_RS07245 0.15 -0.8
1,529,117 + AZOBR_RS07245 0.17 +1.5
1,529,244 - AZOBR_RS07245 0.25 +0.2
1,529,244 - AZOBR_RS07245 0.25 -0.2
1,529,244 - AZOBR_RS07245 0.25 -0.7
1,529,696 + AZOBR_RS07245 0.52 +1.2
1,529,697 - AZOBR_RS07245 0.52 +0.3
1,529,965 + AZOBR_RS07245 0.68 -0.5
1,529,965 + AZOBR_RS07245 0.68 +0.3
1,529,966 - AZOBR_RS07245 0.68 +2.0
1,529,966 - AZOBR_RS07245 0.68 +0.3
1,529,966 - AZOBR_RS07245 0.68 +0.3
1,529,969 + AZOBR_RS07245 0.68 +0.4
1,529,969 + AZOBR_RS07245 0.68 -0.0
1,529,969 + AZOBR_RS07245 0.68 -0.0
1,529,969 + AZOBR_RS07245 0.68 -0.2
1,529,969 + AZOBR_RS07245 0.68 +0.1
1,529,970 - AZOBR_RS07245 0.68 +0.5
1,529,970 - AZOBR_RS07245 0.68 -0.1
1,529,970 - AZOBR_RS07245 0.68 -1.0
1,529,970 - AZOBR_RS07245 0.68 +0.1
1,530,495 + +0.3
1,530,776 + AZOBR_RS07250 0.60 +0.8
1,530,777 - AZOBR_RS07250 0.60 +0.2
1,530,994 - AZOBR_RS07255 0.11 -0.5
1,530,994 - AZOBR_RS07255 0.11 +0.4
1,530,994 - AZOBR_RS07255 0.11 +1.5
1,530,994 - AZOBR_RS07255 0.11 +0.6

Or see this region's nucleotide sequence