Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04800 and AZOBR_RS04805 are separated by 18 nucleotides AZOBR_RS04805 and AZOBR_RS04810 are separated by 60 nucleotides
AZOBR_RS04800: AZOBR_RS04800 - pyruvate dehydrogenase subunit beta, at 1,009,419 to 1,010,450
_RS04800
AZOBR_RS04805: AZOBR_RS04805 - dihydrolipoyllysine acetyltransferase, at 1,010,469 to 1,011,602
_RS04805
AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448
_RS04810
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-1
0
1 at 1009.636 kb on - strand, within AZOBR_RS04800 at 1009.755 kb on + strand, within AZOBR_RS04800 at 1009.755 kb on + strand, within AZOBR_RS04800 at 1009.756 kb on - strand, within AZOBR_RS04800 at 1009.756 kb on - strand, within AZOBR_RS04800 at 1009.902 kb on + strand, within AZOBR_RS04800 at 1009.902 kb on + strand, within AZOBR_RS04800 at 1010.010 kb on + strand, within AZOBR_RS04800 at 1010.010 kb on + strand, within AZOBR_RS04800 at 1010.011 kb on - strand, within AZOBR_RS04800 at 1010.011 kb on - strand, within AZOBR_RS04800 at 1010.011 kb on - strand, within AZOBR_RS04800 at 1010.370 kb on + strand at 1010.370 kb on + strand at 1010.370 kb on + strand at 1010.370 kb on + strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.489 kb on + strand at 1010.489 kb on + strand at 1010.489 kb on + strand at 1010.686 kb on - strand, within AZOBR_RS04805 at 1010.853 kb on + strand, within AZOBR_RS04805 at 1010.964 kb on + strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.318 kb on + strand, within AZOBR_RS04805 at 1011.318 kb on + strand, within AZOBR_RS04805 at 1012.508 kb on + strand at 1012.508 kb on + strand at 1012.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM remove 1,009,636 - AZOBR_RS04800 0.21 -0.2 1,009,755 + AZOBR_RS04800 0.33 -0.4 1,009,755 + AZOBR_RS04800 0.33 +0.6 1,009,756 - AZOBR_RS04800 0.33 -1.0 1,009,756 - AZOBR_RS04800 0.33 -0.4 1,009,902 + AZOBR_RS04800 0.47 -0.5 1,009,902 + AZOBR_RS04800 0.47 +0.1 1,010,010 + AZOBR_RS04800 0.57 +0.0 1,010,010 + AZOBR_RS04800 0.57 +0.4 1,010,011 - AZOBR_RS04800 0.57 +0.7 1,010,011 - AZOBR_RS04800 0.57 +0.3 1,010,011 - AZOBR_RS04800 0.57 +0.5 1,010,370 + +0.1 1,010,370 + -0.1 1,010,370 + -0.1 1,010,370 + -0.6 1,010,371 - +1.1 1,010,371 - +0.3 1,010,371 - +0.0 1,010,371 - -0.2 1,010,371 - -0.3 1,010,489 + +0.2 1,010,489 + -0.9 1,010,489 + +0.7 1,010,686 - AZOBR_RS04805 0.19 -0.7 1,010,853 + AZOBR_RS04805 0.34 +0.5 1,010,964 + AZOBR_RS04805 0.44 -0.0 1,010,965 - AZOBR_RS04805 0.44 -0.2 1,010,965 - AZOBR_RS04805 0.44 +0.1 1,010,965 - AZOBR_RS04805 0.44 +0.2 1,011,204 + AZOBR_RS04805 0.65 -0.7 1,011,204 + AZOBR_RS04805 0.65 +0.2 1,011,204 + AZOBR_RS04805 0.65 +0.3 1,011,204 + AZOBR_RS04805 0.65 +0.3 1,011,318 + AZOBR_RS04805 0.75 +0.1 1,011,318 + AZOBR_RS04805 0.75 +0.1 1,012,508 + -0.3 1,012,508 + -0.8 1,012,508 + -0.5
Or see this region's nucleotide sequence