Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00705

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00700 and AZOBR_RS00705 are separated by 399 nucleotidesAZOBR_RS00705 and AZOBR_RS00710 are separated by 56 nucleotides AZOBR_RS00700: AZOBR_RS00700 - transporter, at 138,908 to 140,587 _RS00700 AZOBR_RS00705: AZOBR_RS00705 - cytochrome C biogenesis protein CcmA, at 140,987 to 141,628 _RS00705 AZOBR_RS00710: AZOBR_RS00710 - heme ABC transporter permease, at 141,685 to 142,350 _RS00710 Position (kb) 140 141 142Strain fitness (log2 ratio) -3 -2 -1 0 1at 140.343 kb on + strand, within AZOBR_RS00700at 140.343 kb on + strand, within AZOBR_RS00700at 140.344 kb on - strand, within AZOBR_RS00700at 140.344 kb on - strand, within AZOBR_RS00700at 140.633 kb on - strandat 140.677 kb on - strandat 140.787 kb on - strandat 140.953 kb on + strandat 140.953 kb on + strandat 140.954 kb on - strandat 140.954 kb on - strandat 140.954 kb on - strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.956 kb on - strandat 140.956 kb on - strandat 140.956 kb on - strandat 140.956 kb on - strandat 142.348 kb on + strandat 142.476 kb on - strandat 142.476 kb on - strandat 142.487 kb on + strandat 142.593 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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140,343 + AZOBR_RS00700 0.85 -1.3
140,343 + AZOBR_RS00700 0.85 +0.3
140,344 - AZOBR_RS00700 0.85 -0.9
140,344 - AZOBR_RS00700 0.85 -0.1
140,633 - -0.1
140,677 - -0.6
140,787 - -3.2
140,953 + -2.1
140,953 + +0.1
140,954 - +0.3
140,954 - +0.2
140,954 - +0.8
140,955 + +0.6
140,955 + +0.6
140,955 + +0.0
140,955 + +0.7
140,955 + +0.1
140,955 + -0.9
140,956 - -0.4
140,956 - +0.2
140,956 - +1.0
140,956 - -0.0
142,348 + +0.6
142,476 - +0.0
142,476 - -0.4
142,487 + -0.1
142,593 + +0.1

Or see this region's nucleotide sequence