Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004181 and ABIE53_004182 are separated by 43 nucleotides ABIE53_004182 and ABIE53_004183 are separated by 86 nucleotides ABIE53_004183 and ABIE53_004184 are separated by 63 nucleotides
ABIE53_004181: ABIE53_004181 - sarcosine oxidase subunit beta, at 356,046 to 357,173
_004181
ABIE53_004182: ABIE53_004182 - putative spermidine/putrescine transport system substrate-binding protein, at 357,217 to 358,263
_004182
ABIE53_004183: ABIE53_004183 - hypothetical protein, at 358,350 to 358,649
_004183
ABIE53_004184: ABIE53_004184 - 2-dehydropantoate 2-reductase, at 358,713 to 359,648
_004184
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 356.712 kb on + strand, within ABIE53_004181 at 356.713 kb on - strand, within ABIE53_004181 at 356.713 kb on - strand, within ABIE53_004181 at 356.788 kb on - strand, within ABIE53_004181 at 357.171 kb on + strand at 357.171 kb on + strand at 357.172 kb on - strand at 357.172 kb on - strand at 357.304 kb on + strand at 357.341 kb on - strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.343 kb on - strand, within ABIE53_004182 at 357.343 kb on - strand, within ABIE53_004182 at 357.343 kb on - strand, within ABIE53_004182 at 357.512 kb on + strand, within ABIE53_004182 at 357.513 kb on - strand, within ABIE53_004182 at 357.513 kb on - strand, within ABIE53_004182 at 357.553 kb on + strand, within ABIE53_004182 at 357.554 kb on - strand, within ABIE53_004182 at 357.619 kb on + strand, within ABIE53_004182 at 357.620 kb on - strand, within ABIE53_004182 at 357.620 kb on - strand, within ABIE53_004182 at 357.819 kb on + strand, within ABIE53_004182 at 357.844 kb on + strand, within ABIE53_004182 at 357.845 kb on - strand, within ABIE53_004182 at 357.845 kb on - strand, within ABIE53_004182 at 357.958 kb on + strand, within ABIE53_004182 at 357.958 kb on + strand, within ABIE53_004182 at 357.958 kb on + strand, within ABIE53_004182 at 358.288 kb on - strand at 358.288 kb on - strand at 358.315 kb on + strand at 358.352 kb on - strand at 358.426 kb on - strand, within ABIE53_004183 at 358.555 kb on + strand, within ABIE53_004183 at 358.555 kb on + strand, within ABIE53_004183 at 358.556 kb on - strand, within ABIE53_004183 at 358.556 kb on - strand, within ABIE53_004183 at 358.556 kb on - strand, within ABIE53_004183 at 358.556 kb on - strand, within ABIE53_004183 at 358.556 kb on - strand, within ABIE53_004183 at 358.617 kb on - strand, within ABIE53_004183 at 358.674 kb on - strand at 358.674 kb on - strand at 358.710 kb on - strand at 358.710 kb on - strand at 358.722 kb on - strand at 358.722 kb on - strand at 358.722 kb on - strand at 358.741 kb on + strand at 358.741 kb on + strand at 358.742 kb on - strand at 358.742 kb on - strand at 358.758 kb on - strand at 358.759 kb on + strand at 358.835 kb on + strand, within ABIE53_004184 at 358.866 kb on + strand, within ABIE53_004184 at 358.867 kb on - strand, within ABIE53_004184 at 358.950 kb on - strand, within ABIE53_004184 at 359.060 kb on + strand, within ABIE53_004184 at 359.060 kb on + strand, within ABIE53_004184 at 359.060 kb on + strand, within ABIE53_004184 at 359.061 kb on - strand, within ABIE53_004184 at 359.061 kb on - strand, within ABIE53_004184
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 356,712 + ABIE53_004181 0.59 +3.6 356,713 - ABIE53_004181 0.59 -0.3 356,713 - ABIE53_004181 0.59 -2.3 356,788 - ABIE53_004181 0.66 +0.4 357,171 + -0.7 357,171 + +0.4 357,172 - +0.2 357,172 - -1.9 357,304 + +1.2 357,341 - ABIE53_004182 0.12 -2.4 357,342 + ABIE53_004182 0.12 -1.8 357,342 + ABIE53_004182 0.12 -0.7 357,342 + ABIE53_004182 0.12 +1.2 357,342 + ABIE53_004182 0.12 +1.2 357,343 - ABIE53_004182 0.12 -0.3 357,343 - ABIE53_004182 0.12 +0.0 357,343 - ABIE53_004182 0.12 -0.7 357,512 + ABIE53_004182 0.28 +1.3 357,513 - ABIE53_004182 0.28 -0.4 357,513 - ABIE53_004182 0.28 -1.6 357,553 + ABIE53_004182 0.32 -0.6 357,554 - ABIE53_004182 0.32 -1.1 357,619 + ABIE53_004182 0.38 +0.2 357,620 - ABIE53_004182 0.38 +2.3 357,620 - ABIE53_004182 0.38 -0.3 357,819 + ABIE53_004182 0.57 +0.5 357,844 + ABIE53_004182 0.60 -0.3 357,845 - ABIE53_004182 0.60 +2.7 357,845 - ABIE53_004182 0.60 -0.5 357,958 + ABIE53_004182 0.71 -0.2 357,958 + ABIE53_004182 0.71 -1.8 357,958 + ABIE53_004182 0.71 +1.7 358,288 - -1.4 358,288 - -0.1 358,315 + +0.1 358,352 - -0.6 358,426 - ABIE53_004183 0.25 +0.0 358,555 + ABIE53_004183 0.68 +0.7 358,555 + ABIE53_004183 0.68 +1.3 358,556 - ABIE53_004183 0.69 -1.4 358,556 - ABIE53_004183 0.69 +1.3 358,556 - ABIE53_004183 0.69 +1.0 358,556 - ABIE53_004183 0.69 -0.1 358,556 - ABIE53_004183 0.69 -0.2 358,617 - ABIE53_004183 0.89 -0.3 358,674 - -0.5 358,674 - +2.3 358,710 - +0.7 358,710 - +0.2 358,722 - +0.3 358,722 - -0.8 358,722 - -0.4 358,741 + +0.3 358,741 + +0.2 358,742 - +0.3 358,742 - +0.7 358,758 - +2.3 358,759 + +0.6 358,835 + ABIE53_004184 0.13 -1.3 358,866 + ABIE53_004184 0.16 -0.5 358,867 - ABIE53_004184 0.16 -0.1 358,950 - ABIE53_004184 0.25 -2.5 359,060 + ABIE53_004184 0.37 +0.7 359,060 + ABIE53_004184 0.37 +0.7 359,060 + ABIE53_004184 0.37 -2.1 359,061 - ABIE53_004184 0.37 -1.3 359,061 - ABIE53_004184 0.37 -0.7
Or see this region's nucleotide sequence