Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000569 and ABIE53_000570 overlap by 4 nucleotides ABIE53_000570 and ABIE53_000571 overlap by 4 nucleotides ABIE53_000571 and ABIE53_000572 are separated by 5 nucleotides ABIE53_000572 and ABIE53_000573 are separated by 62 nucleotides
ABIE53_000569: ABIE53_000569 - glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily II), at 621,168 to 622,106
_000569
ABIE53_000570: ABIE53_000570 - acyl dehydratase, at 622,103 to 622,576
_000570
ABIE53_000571: ABIE53_000571 - putative Fe-S protein YdhL (DUF1289 family), at 622,573 to 622,800
_000571
ABIE53_000572: ABIE53_000572 - prolyl-tRNA editing enzyme YbaK/EbsC (Cys-tRNA(Pro) deacylase), at 622,806 to 623,327
_000572
ABIE53_000573: ABIE53_000573 - hydroxymethylglutaryl-CoA lyase, at 623,390 to 624,316
_000573
Position (kb) 622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 621.133 kb on + strand at 621.133 kb on + strand at 621.134 kb on - strand at 621.200 kb on + strand at 621.200 kb on + strand at 621.200 kb on + strand at 621.201 kb on - strand at 621.201 kb on - strand at 621.375 kb on + strand, within ABIE53_000569 at 621.376 kb on - strand, within ABIE53_000569 at 621.467 kb on + strand, within ABIE53_000569 at 621.467 kb on + strand, within ABIE53_000569 at 621.622 kb on - strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.641 kb on - strand, within ABIE53_000569 at 621.641 kb on - strand, within ABIE53_000569 at 622.106 kb on + strand at 622.106 kb on + strand at 622.106 kb on + strand at 622.106 kb on + strand at 622.107 kb on - strand at 622.107 kb on - strand at 622.257 kb on + strand, within ABIE53_000570 at 622.258 kb on - strand, within ABIE53_000570 at 622.258 kb on - strand, within ABIE53_000570 at 622.258 kb on - strand, within ABIE53_000570 at 622.353 kb on + strand, within ABIE53_000570 at 622.353 kb on + strand, within ABIE53_000570 at 622.353 kb on + strand, within ABIE53_000570 at 622.446 kb on + strand, within ABIE53_000570 at 622.447 kb on - strand, within ABIE53_000570 at 622.534 kb on + strand at 622.661 kb on + strand, within ABIE53_000571 at 622.661 kb on + strand, within ABIE53_000571 at 622.661 kb on + strand, within ABIE53_000571 at 623.353 kb on - strand at 623.393 kb on + strand at 623.393 kb on + strand at 623.547 kb on + strand, within ABIE53_000573 at 623.547 kb on + strand, within ABIE53_000573 at 623.547 kb on + strand, within ABIE53_000573 at 623.548 kb on - strand, within ABIE53_000573 at 623.548 kb on - strand, within ABIE53_000573
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 621,133 + -0.4 621,133 + +4.7 621,134 - -0.9 621,200 + -1.3 621,200 + -1.7 621,200 + +0.7 621,201 - -1.6 621,201 - +0.1 621,375 + ABIE53_000569 0.22 -1.7 621,376 - ABIE53_000569 0.22 +1.1 621,467 + ABIE53_000569 0.32 +1.7 621,467 + ABIE53_000569 0.32 +0.7 621,622 - ABIE53_000569 0.48 -1.3 621,640 + ABIE53_000569 0.50 -1.3 621,640 + ABIE53_000569 0.50 -3.1 621,640 + ABIE53_000569 0.50 +0.0 621,640 + ABIE53_000569 0.50 -1.5 621,641 - ABIE53_000569 0.50 +0.8 621,641 - ABIE53_000569 0.50 -2.3 622,106 + -0.6 622,106 + -0.6 622,106 + -0.6 622,106 + +1.7 622,107 - +1.5 622,107 - -2.2 622,257 + ABIE53_000570 0.32 +0.4 622,258 - ABIE53_000570 0.33 +1.2 622,258 - ABIE53_000570 0.33 +3.2 622,258 - ABIE53_000570 0.33 +3.2 622,353 + ABIE53_000570 0.53 -1.0 622,353 + ABIE53_000570 0.53 -0.5 622,353 + ABIE53_000570 0.53 -2.0 622,446 + ABIE53_000570 0.72 +3.0 622,447 - ABIE53_000570 0.73 -0.6 622,534 + +0.3 622,661 + ABIE53_000571 0.39 +0.7 622,661 + ABIE53_000571 0.39 -1.2 622,661 + ABIE53_000571 0.39 +0.3 623,353 - +0.7 623,393 + -0.4 623,393 + -2.1 623,547 + ABIE53_000573 0.17 +2.2 623,547 + ABIE53_000573 0.17 -0.6 623,547 + ABIE53_000573 0.17 -0.6 623,548 - ABIE53_000573 0.17 +0.5 623,548 - ABIE53_000573 0.17 -1.9
Or see this region's nucleotide sequence